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wtsi-hgi
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gatk-cwl-generator
Generates CWL files from the GATK documentation
MIT License
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How would you prefer to access the GATK doc JSONs?
#22
vdauwera
opened
5 years ago
6
How to cite this?
#21
mr-c
opened
6 years ago
1
fix for case sensitive filesystems
#20
mr-c
closed
6 years ago
0
short option versions don't show up anywhere in generated CWL
#19
jrandall
closed
6 years ago
2
java being run with -D64 instead of -d64
#18
ThomasHickman
opened
6 years ago
1
Add variant-index, variant-md5, bam-index, bam-md5 to the main outputs secondaryFiles
#17
ThomasHickman
closed
6 years ago
4
GenotypeGVCFs --varient needs to include the type Directory
#16
ThomasHickman
closed
6 years ago
0
Add genomicsdb-workspace output for ImportGenomicsDB tool
#15
ThomasHickman
closed
6 years ago
4
Add annotation enum
#14
ThomasHickman
closed
6 years ago
5
Add CI
#13
ThomasHickman
opened
6 years ago
0
Merge latest development into master
#12
ThomasHickman
closed
6 years ago
0
CWL CommandLineTools such as HaplotypeCaller include `analysis_type` input
#11
jrandall
closed
6 years ago
1
Move reference_sequence, refIndex and refDict to the same folder initially
#10
ThomasHickman
closed
6 years ago
2
can't install cwlref-runner and gatk-cwl-generator in same python env
#9
jrandall
closed
6 years ago
1
emit YAML CWL
#8
mr-c
closed
6 years ago
1
Output YAML instead of JSON
#7
mr-c
closed
6 years ago
0
Move DockerRequirement to requirements
#6
ThomasHickman
closed
6 years ago
0
v1.3 (Change docker dependency)
#5
ThomasHickman
closed
6 years ago
0
Generated CWL files can be more portable if they don't hard code path to JAR
#4
mr-c
closed
6 years ago
3
Failing tests - wrong version of Python?
#3
colin-nolan
closed
7 years ago
4
Purpose of `build.sh` unclear to an outsider
#2
colin-nolan
closed
7 years ago
0
Create setup script
#1
ThomasHickman
closed
7 years ago
1