Open olechnwin opened 1 year ago
Hi,
I am running scaff10x using the following command:
/opt/Scaff10X/src/scaff10x \ -nodes 30 \ -data input.dat \ scaffolds_FINAL.fasta scaffolds_FINAL_scaff10x.fasta"
Started running on August 31st and the last output is on August 31st. This is the last output:
[M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 2150538 reads in 1615.708 CPU sec, 58.529 real sec
This is my input.dat
q1=/Data/A673_10x_and_WGS/A673_10x/A673_10x_fastq/A673_combined_S2_L001_R1_002.fastq q2=/Data/A673_10x_and_WGS/A673_10x/A673_10x_fastq/A673_combined_S2_L001_R2_002.fastq q1=/Data/A673_10x_and_WGS/A673_10x/A673_10x_fastq/A673_combined_S2_L002_R1_002.fastq q2=/Data/A673_10x_and_WGS/A673_10x/A673_10x_fastq/A673_combined_S2_L002_R2_002.fastq q1=/Data/A673_10x_and_WGS/A673_10x/A673_10x_fastq/A673_combined_S2_L003_R1_002.fastq q2=/Data/A673_10x_and_WGS/A673_10x/A673_10x_fastq/A673_combined_S2_L003_R2_002.fastq q1=/Data/A673_10x_and_WGS/A673_10x/A673_10x_fastq/A673_combined_S2_L004_R1_002.fastq q2=/Data/A673_10x_and_WGS/A673_10x/A673_10x_fastq/A673_combined_S2_L004_R2_002.fastq q1=/Data/A673_10x_and_WGS/A673_10x/A673_10x_fastq/A673_combined_S4_L001_R1_001.fastq q2=/Data/A673_10x_and_WGS/A673_10x/A673_10x_fastq/A673_combined_S4_L001_R2_001.fastq q1=/Data/A673_10x_and_WGS/A673_10x/A673_10x_fastq/A673_combined_S4_L002_R1_001.fastq q2=/Data/A673_10x_and_WGS/A673_10x/A673_10x_fastq/A673_combined_S4_L002_R2_001.fastq q1=/Data/A673_10x_and_WGS/A673_10x/A673_10x_fastq/A673_combined_S4_L003_R1_001.fastq q2=/Data/A673_10x_and_WGS/A673_10x/A673_10x_fastq/A673_combined_S4_L003_R2_001.fastq q1=/Data/A673_10x_and_WGS/A673_10x/A673_10x_fastq/A673_combined_S4_L004_R1_001.fastq q2=/Data/A673_10x_and_WGS/A673_10x/A673_10x_fastq/A673_combined_S4_L004_R2_001.fastq
I am wondering if there is anything I should done differently. Thank you in advance for your help.
Hi,
I am running scaff10x using the following command:
Started running on August 31st and the last output is on August 31st. This is the last output:
This is my input.dat
I am wondering if there is anything I should done differently. Thank you in advance for your help.