wtsi-hpag / Scaff10X

Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads
MIT License
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Scaff10X error of path in scaff_reads #5

Open mzahm opened 5 years ago

mzahm commented 5 years ago

Hi all,

I tried to run scaff_reads from the 245d6e2 commit. I had an issue about scaff_BC-reads-1 and scaff_BC-reads-2 paths.

.../Scaff10X/src/scaff-bin/scaff-bin/scaff_BC-reads-1: no such file or directory
.../Scaff10X/src/scaff-bin/scaff-bin/scaff_BC-reads-2: no such file or directory

The problem is scaff-bin/scaff-bin/. I changed lines 327 and 333 of scaff_reads.c to have the good path in my environment. It works. But I do not know how to do a generic modification for all environments.