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wtsi-npg / bambi

Process Illumina instrument data into SAM/BAM/CRAM files.
http://wtsi-npg.github.io/bambi
GNU Affero General Public License v3.0
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Added --ignore-missing option to cope with missing bcl files #179

Closed jenniferliddle closed 3 years ago

srl147 commented 3 years ago

the new test data novaseq_1_missing.sam appears to be a bam file

jenniferliddle commented 3 years ago

the new test data novaseq_1_missing.sam appears to be a bam file

Yes. That's because of , errr, historical reasons.

srl147 commented 3 years ago

I should I only noticed because I tried to read it, the test obviously doesn't care

From: Jennifer Liddle @.***> Sent: 28 September 2021 14:39 To: wtsi-npg/bambi Cc: Steven Leonard; Assign Subject: Re: [wtsi-npg/bambi] Added --ignore-missing option to cope with missing bcl files (#179) [EXT]

the new test data novaseq_1_missing.sam appears to be a bam file

Yes. That's because of , errr, historical reasons.

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