Improvements to install.sh script

wtsi-npg / genotyping

Components of the WTSI genotype analysis pipeline.

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Improvements to install.sh script #414

Closed iainrb closed 8 years ago

iainrb commented 8 years ago

Install pipeline from local directory instead of cloning from Github
Capture Ruby gem filename from 'rake gem' output, instead of taking most recently modified file in pkg
Fixed typo in Build.PL

keithj commented 8 years ago

It would be good to use PERL_CPANM_HOME so that the user's home directory doesn't fill up while installing.

The script uses hard-coded Sanger paths (for e.g.GEM_PATH etc) and GEM_PATH / GEM_HOME set by the user get clobbered, so the script fails on a non-Sanger machines.

iainrb commented 8 years ago

Issues in previous comment by keithj now fixed, should be OK to merge