Updated logging/documentation in command line scripts - Githubissues

wtsi-npg / genotyping

Components of the WTSI genotype analysis pipeline.

5 stars 7 forks source link

Updated logging/documentation in command line scripts #425

Closed iainrb closed 8 years ago

iainrb commented 8 years ago

Ensure log level is propagated to objects created by the script
Replace warn/die with carp/croak or logwarn/logcroak
Check return values of open/close for filehandles
Update copyright statements
Add basic Perldoc to scripts without any

iainrb commented 8 years ago

Factor out log config to a new module in WTSI::DNAP::Utilities
Suppress unwanted screen output from tests