upstream_tags check should decode with bambi

wtsi-npg / npg_qc

QC checks and metrics for Illumina NGS data

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upstream_tags check should decode with bambi #402

Closed dozy closed 6 years ago

dozy commented 7 years ago

the upstream_tags check (npg_qc/autoqc/checks/upstream_tags.pm) should use bambi instead of BamIndexDecoder for its decoding (see BamIndexDecoder_cmd attribute)

mgcam commented 6 years ago

resolved via https://github.com/wtsi-npg/npg_qc/commit/3c7d4e312a83856e002bb52f00af76e2c1d454e4#diff-cbc1a66ee94b68aac1119acb619eaf4c