Replace Biobambam with Samtools' markdup

wtsi-npg / npg_ranger

NGS data streaming (sam, bam, cram, vcf) - pre-production

Other

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Closed GrishaH closed 4 years ago

GrishaH commented 4 years ago

Remove bamstreamingmarkduplicates and function used to construct it
Replace its functionality with samtool's markdup utility, present in samtools 1.6 and up