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wtsi-npg / npg_seq_pipeline

Processing and analysis of data coming from Illumina sequencing machines
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is_hiseqx_run should come from data in run folder #158

Closed dkj closed 6 years ago

dkj commented 8 years ago

i.e. it should come from the info available in the run folder like runParameters.xml and not come from the tracking system.

Should allow us to remove some of the npg xml in t/data

dkj commented 8 years ago

Alternatively:

  1. Check for absence of Data/Intensities/L001/s_1_1101.clocs and Data/Intensities/L001/s_1_1101.locs.
  2. And/or for presence of Data/Intensities/s.locs.

And replace method with is_ordered_flowcell.

mgcam commented 6 years ago

Resoleved via https://github.com/wtsi-npg/npg_seq_pipeline/pull/281