wtsi-npg / p4

Process and Pipe Pipeline Panacea
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Fix various missing items #343

Closed kjsanger closed 2 months ago

kjsanger commented 2 months ago

Add io_lib to support CRAM for libmaus tools

Add PCAP-core to supply a bam_stats executable

Set Perl local::lib to /usr/local rather than /usr/local/lib

Add libnettle to get sha512primesums512 support

Add bwa0_6 symlink

Change the Docker user from "p4user" to "appuser" because we use that in other Dockerfiles

kjsanger commented 2 months ago

Rebased