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wtsi-npg / samtools_container

Scripts to create a docker container for samtools
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add missing libcurl4 runtime dependency #11

Closed dkj closed 6 months ago

dkj commented 6 months ago

without this I get:

docker run ghcr.io/wtsi-npg/samtools htsfile -v gs://sanger-REDACTED.vcf.gz
[W::load_plugin] can't load plugin "/usr/local/libexec/htslib/hfile_libcurl.so": libcurl.so.4: cannot open shared object file: No such file or directory

and

docker run ghcr.io/wtsi-npg/samtools ldd /usr/local/libexec/htslib/hfile_libcurl.so | grep not
        libcurl.so.4 => not found