Resolved issue #9 - corrected --cram option requiring trailing slash

wtsi-team112 / ncov2019-artic-nf

A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019 - adapted to run at the Wellcome Sanger Institute

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Resolved issue #9 - corrected --cram option requiring trailing slash #10

Closed JonKeatley112 closed 4 years ago

JonKeatley112 commented 4 years ago

Changed Channel.fromPath( "${runDirectory}*.cram" ) to Channel.fromPath( "${runDirectory}/*.cram" )

Tested --directory with both ./cram/ and ./cram. Both versions detected the correct number of crams