search

wtsi-team112 / ncov2019-artic-nf

A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019 - adapted to run at the Wellcome Sanger Institute
0 stars 4 forks source link

Work with single ended Illumina data #13

Open dkj opened 4 years ago

dkj commented 4 years ago

The workflow requires paired-end data, but we may be able to use just the first read (when the Illumina adapter are ligated on the PCR amplicon product in random orientation).

dkj commented 4 years ago

worth checking result from single end before implementing.