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wu-yc / scMetabolism

Quantifying metabolism activity at the single-cell resolution
BSD 3-Clause "New" or "Revised" License
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question about DotPlot.metabolism #6

Closed xutongran closed 2 years ago

xutongran commented 2 years ago

Hi Wu yc ! I had a similar problem, when i run this command "DotPlot.metabolism(obj = countexp.Seurat, pathway = input.pathway, phenotype = "ident", norm = "y")", Error in [.data.frame(metadata, , input.parameter) : 选择了未定义的列, I want to request you: how to fix this kind of error

wu-yc commented 2 years ago

You can just extract the metabolic activity matrix and visualize it by using ggplot. We will fix this in the next version of scMetabolism.

Thanks again for your support.