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wurmlab / flo

Same species annotation lift over pipeline.
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liftover gtf file #26

Closed olechnwin closed 3 years ago

olechnwin commented 5 years ago

Hi,

Sorry if this has been discussed before but I can't find it. Is it possible to liftover a gtf instead of a gff file?

Thank you.

yeban commented 5 years ago

For GTF, you can use flo to create the chain file (run/liftover.chn) and then use it directly with the liftOver command.