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wurmlab / flo

Same species annotation lift over pipeline.
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Issue a release & publish on Bioconda? #45

Open photocyte opened 1 year ago

photocyte commented 1 year ago

Hi there,

Big fan of flo. Has worked really well for my research. But it would be even better if flo were on bioconda and had its dependencies explicitly linked, namely:

conda install -c bioconda genometools-genometools
conda install -c conda-forge parallel
conda install -c bioconda -y ucsc-liftup ucsc-fasplit ucsc-liftover ucsc-axtchain ucsc-chainnet ucsc-blat ucsc-chainsort ucsc-fatotwobit ucsc-twobitinfo ucsc-chainsplit ucsc-chainmergesort ucsc-netchainsubset

A first step towards that, I believe would be issuing a Release here on this Github Repo. Then the Bioconda recipe could point to that release.

All the best, -Tim

photocyte commented 1 year ago

I got started on a Bioconda recipe (https://github.com/photocyte/bioconda-recipes/compare/master...photocyte:bioconda-recipes:TRF_flo_branch).

I am by no means an expert & would be happy to defer to yall to publish such a recipe.

But, it also seems there is no software License for flo. I wonder if you might consider adding one so it could be used with Bioconda?