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wurmlab / genevalidatorapp

A web wrapper for GeneValidator
GNU Affero General Public License v3.0
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Main ORF validation showing unexpected error. #8

Closed yeban closed 9 years ago

yeban commented 9 years ago

True with GV 1.5.4 and 1.5.2. Running directly with GV doesn't show 'Unexepcted error' though. Test data:

>ENA|AAT08493|AAT08493.1 Rhineura floridana cytochrome c oxidase subunit II 
ATGGCTCATCCATTCCAAATAGGCCTACAAGACGCAACATCCCCAGTAATAGAAGAGCTA
ATTTACTTCCATGACCATGCCTTAATAGTCGTACTCCTTATTAGCGCATTAGTATTCTAT
ATTATCACACTAATACTTACAACCAAACTCACACACACAAGCATACTGGACGCCCAAGAA
ATAGAAATTATCTGGACGATCCTACCAGCTATTGTACTTGTAATAGTTGCCCTACCATCA
CTACGCATTCTATATCTAATCGATGAAGTCGACAACGCCCATCTAACAATCAAGGCCATT
GGACATCAATGATACTGAAGCTACGAGTATACAGATTACCAAGATATTACATTTGACTCA
TACATAACCCCATCATCCGACCTACTCCCTGGCCACCTGCGATTGTTAGAAGTTGACCAT
CGAATAACAGTACCAATGGAATCCCCAATCCGCATATTAATCTCAGCCGAAGATGTACTA
CACTCATGGGCTGTGCCAACACTCGCCATTAAAACAGACGCTGTACCAGGCCGACTAAAC
CAAACAACTTTCTTAACCACCCGTCCTGGACTGTTCTACGGACAATGCTCAGAAATTTGC
GGAGCAAACCATAGCTTTATACCAATTGTAGTAGAAGCCACCACATTAAAACACTTCGAA
ACCTGATCAACAATAATACTTTAA
yannickwurm commented 9 years ago

@ismailm is this resolved? @yeban

IsmailM commented 9 years ago

Fixed - 5725c7483a9d8bc6b6c5487ff82e701ff25b1c4b

I'll release an updated gem shortly.