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wurmlab / sequenceserver

Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
https://sequenceserver.com
GNU Affero General Public License v3.0
268 stars 112 forks source link

Dot plot. #248

Open yeban opened 8 years ago

yeban commented 8 years ago

Dot plot is a great way to visualise local sequence similarity. There are several tools to generate dot-plot, but it might be worth writing something simple of our own using pairwise alignment generated by BLAST. Alternative might be to dump data in a format that can be imported into a popular dot plot generator. My inclination, though, is former with the visualisation embeded in our HTML results and the ability to download a publication quality PNG / SVG.

https://en.wikipedia.org/wiki/Dot_plot_(bioinformatics)

yeban commented 8 years ago

@yannickwurm Maybe dot-plot is redundant with Kablammo?

/cc @vivekiitkgp

yannickwurm commented 8 years ago

no

On 21 Mar 2016, at 06:40, Anurag Priyam notifications@github.com wrote:

@yannickwurm I have been thinking, maybe dot-plot is redundant with Kablammo?

/cc @vivekiitkgp

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