tadast
commented
6 months ago Given N means "unsure what base it is", would it make more sense to ignore them whatsoever when it comes to determining the type of input?
NB: I haven't looked at the code yet, just thinking it would probably be a more robust solution than simply increasing the read window?
Eg. the following comes back as "false" rather than nucl or prot, and thus leads to failure
This is because the first >3,000,000 characters are N. The simple solution is to read up to 5,000,000 chars. (or up to 10,000,000?). I think this should still be super fast.