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wurmlab / sequenceserver

Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
https://sequenceserver.com
GNU Affero General Public License v3.0
268 stars 111 forks source link

Use Rackup #756

Closed tadast closed 2 months ago

tadast commented 2 months ago

In Rack 3 handlers were moved to the rackup gem.

Fixes #755

wolfgangrumpf commented 2 months ago

@tadast thanks for jumping on this so fast! I'd be happy to test but I'm not sure how to pull a specific release and then install that....

tadast commented 2 months ago

Hey, we’ve released v3.1.1 that should address the problem, please try that and reopen the issue if it still doesn't work

Tadas

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wolfgangrumpf commented 2 months ago

I just ran "sudo gem update" and I'm getting errors on compilation for fiddle, exconf, and psych. I suspect I'd be better of uninstalling and reinstalling? If true, what's the best way to go about doing that?

tadast commented 2 months ago 
gem update sequenceserver

or

gem install sequenceserver -v=3.1.1

if you don't enjoy running sequenceserver yourself there's also a hassle-free hosted version you can use that comes with more features.

wolfgangrumpf commented 2 months ago

I kinda do enjoy having it locally for teaching purposes (sandboxed databases). I did the update and now the interface comes up, which is good, but it doesn't have any database selections, which is bad. I do have databases downloaded and configured in the conf but it doesn't seem to see them.

I guess I'm either a developer's nightmare or the best edge case discoverer around....