Only try to look up custom annotations if we have some.

wustl-oncology / analysis-wdls

Scalable genomic analysis pipelines, written in WDL

MIT License

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Only try to look up custom annotations if we have some. #81

Closed tmooney closed 1 year ago

tmooney commented 1 year ago

required_files (despite the name) is the files that are required for the optional custom annotations. If none were supplied there will be no entries in the array so we can't assume we will get a path.

malachig commented 1 year ago

My tests with this PR have been successful. VEP annotations appear to be in order.