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wustl-oncology / cloud-workflows

Infrastructure and tooling required to get genomic workflows running in the cloud
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Cromwell config file is not within a writable dir #23

Closed Layth17 closed 2 years ago

Layth17 commented 2 years ago

https://github.com/griffithlab/cloud-workflows/blob/eca11d0cf42c06c28b246516c8462e491e7abdbf/manual-workflows/resources.sh#L103

$SRC_DIR is /opt/scripts/ and /opt/ is not writable so the Cromwell config file cannot be generated.

Should make the output file dir configurable

Layth17 commented 2 years ago
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