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wwaites / saved_fisdat

SAVED project - data processing tools for fish farms
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Write operation timing out #9

Open MeadhbhMoriarty opened 3 months ago

MeadhbhMoriarty commented 3 months ago

See attached text document for full details.

I've pulled a copy of fisdat this morning, and tried to upload 1 file using fisup, its quite small, up it's still timing out on me.

Thanks for your help, M Fisup_upload error.txt

druimalban commented 3 months ago

Hi Meadhbh,

Thanks for that. I think you may be using an older version, perhaps prior to adding the initial fix for the timeouts. We since changed the schema to the LinkML YAML files, and stopped processing the old JSON formatted ones.

I have pushed an update to the main branch which will print the version of the program (and this should automatically increment when we make updates to the repository).

I've also put a note in the main README file advising the use of the -e / --editable flag with pip, so that when we update the repository, and you pull in changes from Github, the changes run when you call the program. However, I'm not sure how this interacts with conda. If it has a similar option, that would be the approach to take.

As regards to the new YAML schema format we discussed last week, there are some examples of these in the two example directories. If it is not clear how to adapt these, please let me know. I have been writing these for a few weeks, so they seem straightforward to me, but I apprecaiate they may not be, and there may be odd errors.