wwood / CoverM

Read coverage calculator for metagenomics
GNU General Public License v3.0
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build(deps): update bio requirement from 0.38.0 to 0.39.1 #102

Closed dependabot[bot] closed 2 years ago

dependabot[bot] commented 2 years ago

Updates the requirements on bio to permit the latest version.

Changelog

Sourced from bio's changelog.

0.39.1 (2022-01-12)

Bug Fixes

  • added code to ignore commented lines in a bed file (#474) (d17f823)

0.39.0 (2021-10-20)

Features

0.38.0 (2021-10-04)

Features

  • adds iupac amino acid alpha (#444) (f4b7a7c)
  • Allow to compute bayesian model via the exploration of the marginal distribution. (#453) (d09033c)

Bug Fixes

  • backward search yielding potentially incorrect positions on FM-Index (#454) (#455) (3489e6a)

0.37.1 (2021-08-23)

Bug Fixes

  • One Simple Trick to significantly improve the speed and memory usage of Occ (#448) (9aa79cb)
  • sampled suffix array (#447) (00f9846)

0.37.0 (2021-07-09)

Features

  • add method to retrieve all event posteriors from Bayesian model. (e5feda8)

0.36.0 (2021-07-06)

Features

  • Baum-Welch algorithm for Discrete HMM (#432) (eb8b8cb)

... (truncated)

Commits


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dependabot[bot] commented 2 years ago

Looks like bio is no longer updatable, so this is no longer needed.