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wwood / CoverM

Read coverage calculator for metagenomics
GNU General Public License v3.0
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build(deps): update bio requirement from 0.39.0 to 0.40.0 #107

Closed dependabot[bot] closed 2 years ago

dependabot[bot] commented 2 years ago

Updates the requirements on bio to permit the latest version.

Changelog

Sourced from bio's changelog.

0.40.0 (2022-02-25)

Features

  • base specific hop parameters in homopoly-pair-hmm (#480) (cf75b6c)

Miscellaneous Chores

0.39.2 (2022-02-09)

Bug Fixes

  • Make QGramIndex use less memory; fix bug; improve tests&docs (#471) (48bac1c)
  • overflow in qgrams for k=32 (#478) (8048eb8)

0.39.1 (2022-01-12)

Bug Fixes

  • added code to ignore commented lines in a bed file (#474) (d17f823)

0.39.0 (2021-10-20)

Features

0.38.0 (2021-10-04)

Features

  • adds iupac amino acid alpha (#444) (f4b7a7c)
  • Allow to compute bayesian model via the exploration of the marginal distribution. (#453) (d09033c)

Bug Fixes

  • backward search yielding potentially incorrect positions on FM-Index (#454) (#455) (3489e6a)

0.37.1 (2021-08-23)

Bug Fixes

... (truncated)

Commits
  • 93289d5 chore: release 0.40.0 (#485)
  • cf8ebc3 chore: release 0.40.0
  • 30cb008 also require BaseSpecificHopParameters when building a new HPHMM struct insta...
  • a7fb87a pub use BaseSpecificHopParameters, (#483)
  • cf75b6c feat!: base specific hop parameters in homopoly-pair-hmm (#480)
  • 8a900a2 chore: release 0.39.2 (#479)
  • 8048eb8 fix: overflow in qgrams for k=32 (#478)
  • 48bac1c fix: Make QGramIndex use less memory; fix bug; improve tests&docs (#471)
  • b244a21 docs: reorder CHANGELOG and fix headers (#476)
  • 523a3ae chore: release 0.39.1 (#475)
  • Additional commits viewable in compare view


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dependabot[bot] commented 2 years ago

Superseded by #110.