An error during the installation of development version

[ilnamkang]

I'm trying to install the development version.

I encountered an error when I ran "cargo run -- genome ...etc...".

The error message is below.

Would you let me know the cause of this error and how I can avoid the error?

Thanks.

------ ... ... ... Compiling rust-htslib v0.44.1 Compiling skani v0.1.1 Compiling galah v0.3.1 (https://github.com/wwood/galah#113035e8) Compiling coverm v0.6.1 (/home/kangin/Programs/CoverM) error[E0063]: missing field dereplication_cluster_method_argument in initializer of GalahClustererCommandDefinition --> src/cli.rs:27:9 | 27 | galah::cluster_argument_parsing::GalahClustererCommandDefinition { | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ missing dereplication_cluster_method_argument

For more information about this error, try rustc --explain E0063. error: could not compile coverm (lib) due to previous error warning: build failed, waiting for other jobs to finish... ------

[wwood]

Hi,

Is this fixed in the commit I jus pushed, 66bff34 ?

[ilnamkang]

Hi,

I'm not sure if this problem has been fixed or not. I encountered a warning message (see below).

But anyway, after building, I can run ~/CoverM/target/debug/coverm without errors.

------ Compiling skani v0.1.1 Compiling galah v0.3.1 (https://github.com/wwood/galah#113035e8) Compiling coverm v0.6.1 (/home/kangin/Programs/CoverM) Finished dev [unoptimized + debuginfo] target(s) in 35.88s warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4, partitions v0.2.4 note: to see what the problems were, use the option --future-incompat-report, or run cargo report future-incompatibilities --id 1 Running target/debug/coverm genome ...etc... error: unexpected argument '...etc...' found

Usage: coverm genome [OPTIONS]

For more information, try '--help'. ------

[wwood]

Hi,

It appears you might be specifying the command line incorrectly?

If the problem persists let me know what you used. Thanks

[ilnamkang]

Hi,

1) The error was due to my mistake in the command. My command included "...etc...".

$ cargo run -- genome ...etc...

2) The warning below seems to persist when I run "cargo run -- genome". But, I can run the built coverm without any problems.

warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4, partitions v0.2.4 note: to see what the problems were, use the option --future-incompat-report, or run cargo report future-incompatibilities --id 1