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wwood / CoverM

Read coverage calculator for metagenomics
GNU General Public License v3.0
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How can I use CoverM to calculate the abundace of hybrid-assembly recovered MAGs? #217

Open brilliant2643 opened 4 days ago

brilliant2643 commented 4 days ago

Hi! I'm planning to calculate the abundance of MAGs, but I don't know whether the assembly method will affect the command and input data of CoverM. By the way, I use nanopore reads and Illumina reads to assemble the configs, and recovered MAGs from those contigs. Do you have any idea about what command and input data I should use to run CoverM?

Thanks a lot and looking forward to your reply! Sushi