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wwood / CoverM

Read coverage calculator for metagenomics
GNU General Public License v3.0
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Filtering by MapQ #219

Closed SDmetagenomics closed 1 month ago

SDmetagenomics commented 4 months ago

Would it be possible to add an option to filter read alignments by mapQ score? This can be useful for metagenomics datasets where many similar organisms are being compared.

wwood commented 2 months ago

Good suggestion Specier. Initial (final?) implementation is at https://github.com/wwood/CoverM/pull/222 if you wanted to take it for a spin.

SDmetagenomics commented 2 months ago

Wow thank you this is fantastic. Looking forward to the next coverM update!

Diamond Lab https://diamondlab.bio/ | IGI https://innovativegenomics.org/ | BIOME https://innovativegenomics.org/microbiome-editing/ X: @DrDiamond <https://x.com/DrDiamond>

On Sep 16, 2024, at 10:39 PM, Ben J Woodcroft @.***> wrote:

Good suggestion Specier. Initial (final?) implementation is at #222 https://github.com/wwood/CoverM/pull/222 if you wanted to take it for a spin.

— Reply to this email directly, view it on GitHub https://github.com/wwood/CoverM/issues/219#issuecomment-2354571607, or unsubscribe https://github.com/notifications/unsubscribe-auth/AEFTX2OB6AFCSIL7JPS5XRLZW66CLAVCNFSM6AAAAABK2QXIL6VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDGNJUGU3TCNRQG4. You are receiving this because you authored the thread.

wwood commented 1 month ago

Thanks for the enthusiasm Spencer.