wwood / CoverM

Read coverage calculator for metagenomics
GNU General Public License v3.0
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build(deps): update rust-htslib requirement from 0.35.* to 0.36.* #57

Closed dependabot-preview[bot] closed 3 years ago

dependabot-preview[bot] commented 3 years ago

Updates the requirements on rust-htslib to permit the latest version.

Changelog

Sourced from rust-htslib's changelog.

[0.36.0] - 2020-11-23

Changes

[0.35.2] - 2020-11-23

Changes

  • let hts-sys dependency comply to semver.

[0.35.1] - 2020-11-23

Changes

  • Fixed wrongly define missing value constants in bcf::record (@johanneskoester).
  • Bump hts-sys depedency to the latest version, containing build fixes for macOS (@johanneskoester).

[0.35.0] - 2020-11-19

Changes

  • BREAKING: info and format field access in BCF records now allocates a separate buffer each time. In addition, it is also possible to pass a buffer that has been created manually before (@johanneskoester)
  • Fixes for building on macOS (@brainstorm)

Added

[0.34.0] - 2020-11-13

Added

  • Ability to set minimum refetch distance in bam::RecordBuffer.

[0.33.0] - 2020-11-04

Changes

  • BREAKING: Rename feature 'serde' as 'serde_feature' (for technical reasons)
  • BREAKING: Consolidate module-wide errors into a crate-wide error module
  • Making bcf::IndexedReader always unpack records to reflect the behaviour of bcf::Reader.
  • Adding bcf::errors::Error::FileNotFound and using it.
  • Fixes for musl compilation (@brainstorm).
  • Improved BCF constants handling (@juliangehring)
  • Fixes for tabix reader (@felix-clark, @brainstorm).
  • Fixes for BCF handling (@holtgrewe, @tedil).
  • Documentation improvements (@vsoch, @brainstorm, @edmundlth).
  • BREAKING: Improved, more ergonomic BAM fetch API (@TiberiusPrime, @brainstorm, @tedil).
  • BREAKING: Let BamRecordExtensions return iterators instead of vectors (@TiberiusPrime).
  • Handle all errors via a unified single thiserror based enum (@landesfeind).
  • BREAKING: BAM read API now returns Option (@slazicoicr).

Added

... (truncated)

Commits
  • 56937f6 release version 0.36.0
  • 358b1fe update changelog
  • 9627a5d add read orientation detection (#289)
  • 490e367 GenotypeAllele encoding and documentation for pushing to Record (#285)
  • d387e17 (cargo-release) start next development iteration 0.35.3-alpha.0
  • 0566b79 release version 0.35.2
  • b747083 update changelog
  • d08ffb8 fix hts-sys dependency
  • e75f2d8 define latest as pre-release of 1.11.1 instead
  • 78206c0 go back to 1.11.0
  • Additional commits viewable in compare view


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dependabot-preview[bot] commented 3 years ago

Looks like rust-htslib is up-to-date now, so this is no longer needed.