Failed to correctly find or parse BAM file

Hi Ben,

Thank you for your response. Here is the full log:

[2021-06-21T23:31:49Z INFO coverm] CoverM version 0.6.1 [2021-06-21T23:31:49Z DEBUG coverm] Generating output writer from path None [2021-06-21T23:31:49Z DEBUG coverm] Outputing to STDOUT [2021-06-21T23:31:49Z INFO coverm] Using min-covered-fraction 10% [2021-06-21T23:31:49Z DEBUG coverm] Cached regular coverage taker with columns to normlise: [] and rpkm_column: Some(0) and tpm_column: None [2021-06-21T23:31:49Z DEBUG coverm] Filter parameters set as FilterParameters { flag_filters: FlagFilter { include_improper_pairs: true, include_supplementary: true, include_secondary: false }, min_aligned_length_single: 0, min_percent_identity_single: 0.0, min_aligned_percent_single: 0.0, min_aligned_length_pair: 0, min_percent_identity_pair: 0.0, min_aligned_percent_pair: 0.0 } [2021-06-21T23:31:49Z DEBUG bird_tool_utils::external_command_checker] Checking for minimap2 .. [2021-06-21T23:31:49Z DEBUG bird_tool_utils::external_command_checker] Running minimap2, found version STDOUT: "2.17-r941" [2021-06-21T23:31:49Z INFO bird_tool_utils::external_command_checker] Found minimap2 version 2.17-r941 [2021-06-21T23:31:49Z DEBUG bird_tool_utils::external_command_checker] Checking for samtools .. [2021-06-21T23:31:50Z DEBUG bird_tool_utils::external_command_checker] Running samtools, found version STDOUT: "samtools 1.12\nUsing htslib 1.12\nCopyright (C) 2021 Genome Research Ltd.\n\nSamtools compilation details:\n Features: build=configure curses=yes \n CC: /opt/conda/conda-bld/samtools_1616892191687/_build_env/bin/x86_64-conda-linux-gnu-cc\n CPPFLAGS: -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/vilardi.k/.conda/envs/coverm_6.1/include\n CFLAGS: -Wall -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/vilardi.k/.conda/envs/coverm_6.1/include -fdebug-prefix-map=/opt/conda/conda-bld/samtools_1616892191687/work=/usr/local/src/conda/samtools-1.12 -fdebug-prefix-map=/home/vilardi.k/.conda/envs/coverm_6.1=/usr/local/src/conda-prefix\n LDFLAGS: -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/vilardi.k/.conda/envs/coverm_6.1/lib -Wl,-rpath-link,/home/vilardi.k/.conda/envs/coverm_6.1/lib -L/home/vilardi.k/.conda/envs/coverm_6.1/lib\n HTSDIR: \n LIBS: \n CURSES_LIB: -ltinfow -lncursesw\n\nHTSlib compilation details:\n Features: build=configure plugins=yes, plugin-path=/home/vilardi.k/.conda/envs/coverm_6.1/libexec/htslib libcurl=yes S3=yes GCS=yes libdeflate=yes lzma=yes bzip2=yes htscodecs=1.0\n CC: /opt/conda/conda-bld/htslib_1616818599374/_build_env/bin/x86_64-conda-linux-gnu-cc\n CPPFLAGS: -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/vilardi.k/.conda/envs/coverm_6.1/include\n CFLAGS: -Wall -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/vilardi.k/.conda/envs/coverm_6.1/include -fdebug-prefix-map=/opt/conda/conda-bld/htslib_1616818599374/work=/usr/local/src/conda/htslib-1.12 -fdebug-prefix-map=/home/vilardi.k/.conda/envs/coverm_6.1=/usr/local/src/conda-prefix -fvisibility=hidden\n LDFLAGS: -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/vilardi.k/.conda/envs/coverm_6.1/lib -Wl,-rpath-link,/home/vilardi.k/.conda/envs/coverm_6.1/lib -L/home/vilardi.k/.conda/envs/coverm_6.1/lib -fvisibility=hidden -rdynamic\n\nHTSlib URL scheme handlers present:\n built-in:\t preload, data, file\n Amazon S3:\t s3+https, s3+http, s3\n S3 Multipart Upload:\t s3w, s3w+https, s3w+http\n libcurl:\t imaps, pop3, gophers, http, smb, gopher, sftp, ftps, imap, smtp, smtps, rtsp, scp, ftp, telnet, mqtt, https, smbs, tftp, pop3s, dict\n Google Cloud Storage:\t gs+http, gs+https, gs\n crypt4gh-needed:\t crypt4gh\n mem:\t mem" [2021-06-21T23:31:50Z INFO bird_tool_utils::external_command_checker] Found samtools version 1.12 [2021-06-21T23:31:50Z INFO coverm] Profiling 204 genomes [2021-06-21T23:31:50Z INFO coverm] Generating concatenated reference FASTA file of 204 genomes .. [2021-06-21T23:32:01Z DEBUG coverm::mapping_parameters] Setting mapper MINIMAP2_SR options as 'None' [2021-06-21T23:32:01Z INFO coverm] Not pre-generating minimap2 index [2021-06-21T23:32:01Z DEBUG coverm::bam_generator] Queuing cmd_string: set -e -o pipefail; minimap2 --split-prefix /tmp/.tmpCEJCFZ -a -x sr -t 1 '/tmp/.tmpvjmWmw' '/scratch/vilardi.k/katiefiles/clean_reads2/all_fq/combined2/R1.fq' '/scratch/vilardi.k/katiefiles/clean_reads2/all_fq/combined2/R2.fq' 2>/tmp/.tmprPX6SE | remove_minimap2_duplicated_headers 2>/tmp/.tmp6cd6wm| samtools sort -T '/tmp/coverm_fifo.dcdN7T94O98r/coverm-make-samtools-sortPTyam7' -l0 -@ 0 2>/tmp/.tmpewwq86 > "/tmp/coverm_fifo.dcdN7T94O98r/foo.pipe" [2021-06-21T23:32:01Z DEBUG coverm] Finished BAM setup [2021-06-21T23:32:01Z DEBUG coverm::genome] Calculating coverage using a split character ~ [2021-06-21T23:32:01Z DEBUG coverm::bam_generator] Starting mapping processes [2021-06-21T23:32:01Z DEBUG coverm::bam_generator] Running mapping command: bash -c "set -e -o pipefail; minimap2 --split-prefix /tmp/.tmpCEJCFZ -a -x sr -t 1 '/tmp/.tmpvjmWmw' '/scratch/vilardi.k/katiefiles/clean_reads2/all_fq/combined2/R1.fq' '/scratch/vilardi.k/katiefiles/clean_reads2/all_fq/combined2/R2.fq' 2>/tmp/.tmprPX6SE | remove_minimap2_duplicated_headers 2>/tmp/.tmp6cd6wm| samtools sort -T '/tmp/coverm_fifo.dcdN7T94O98r/coverm-make-samtools-sortPTyam7' -l0 -@ 0 2>/tmp/.tmpewwq86 > "/tmp/coverm_fifo.dcdN7T94O98r/foo.pipe"" [2021-06-22T03:34:35Z ERROR coverm::bam_generator] Failed to correctly find or parse BAM file at "/tmp/coverm_fifo.dcdN7T94O98r/foo.pipe": unable to open SAM/BAM/CRAM file at /tmp/coverm_fifo.dcdN7T94O98r/foo.pipe [2021-06-22T03:34:35Z ERROR coverm::bam_generator] Error when running mapping process. Exitstatus was ExitStatus(ExitStatus(256)). Command run was: ["bash -c \"set -e -o pipefail; minimap2 --split-prefix /tmp/.tmpCEJCFZ -a -x sr -t 1 \'/tmp/.tmpvjmWmw\' \'/scratch/vilardi.k/katiefiles/clean_reads2/all_fq/combined2/R1.fq\' \'/scratch/vilardi.k/katiefiles/clean_reads2/all_fq/combined2/R2.fq\' 2>/tmp/.tmprPX6SE | remove_minimap2_duplicated_headers 2>/tmp/.tmp6cd6wm| samtools sort -T \'/tmp/coverm_fifo.dcdN7T94O98r/coverm-make-samtools-sortPTyam7\' -l0 -@ 0 2>/tmp/.tmpewwq86 > \"/tmp/coverm_fifo.dcdN7T94O98r/foo.pipe\"\""] [2021-06-22T03:34:35Z DEBUG coverm::bam_generator] The overall STDERR was: "" [2021-06-22T03:34:35Z ERROR coverm::bam_generator] The STDERR for the MINIMAP2_SR part was: [M::mm_idx_gen::31.1091.00] collected minimizers [M::mm_idx_gen::42.3031.00] sorted minimizers [M::main::42.3171.00] loaded/built the index for 61876 target sequence(s) [M::mm_mapopt_update::42.3171.00] mid_occ = 1000 [M::mm_idx_stat] kmer size: 21; skip: 11; is_hpc: 0; #seq: 61876 [M::mm_idx_stat::44.8831.00] distinct minimizers: 141106292 (97.23% are singletons); average occurrences: 1.037; average spacing: 6.011 [M::worker_pipeline::58.6230.99] mapped 335338 sequences [M::worker_pipeline::70.3471.00] mapped 335354 sequences [M::worker_pipeline::81.0731.00] mapped 335304 sequences [M::worker_pipeline::91.8571.00] mapped 335268 sequences [M::worker_pipeline::102.2121.00] mapped 335252 sequences [M::worker_pipeline::112.6871.00] mapped 335314 sequences [M::worker_pipeline::123.1441.00] mapped 335320 sequences [M::worker_pipeline::133.3931.00] mapped 335432 sequences [M::worker_pipeline::144.0431.00] mapped 335374 sequences [M::worker_pipeline::154.2341.00] mapped 335288 sequences [M::worker_pipeline::164.5201.00] mapped 335310 sequences [M::worker_pipeline::174.5281.00] mapped 335248 sequences [M::worker_pipeline::184.6261.00] mapped 335260 sequences [M::worker_pipeline::195.1821.00] mapped 335268 sequences [M::worker_pipeline::205.6601.00] mapped 335266 sequences [M::worker_pipeline::215.5691.00] mapped 335318 sequences [M::worker_pipeline::226.1811.00] mapped 335324 sequences [M::worker_pipeline::236.3461.00] mapped 335292 sequences [M::worker_pipeline::246.3791.00] mapped 335318 sequences [M::worker_pipeline::256.5911.00] mapped 335282 sequences [M::worker_pipeline::267.0311.00] mapped 335300 sequences [M::worker_pipeline::277.3271.00] mapped 335290 sequences [M::worker_pipeline::287.5161.00] mapped 335322 sequences [M::worker_pipeline::297.6031.00] mapped 335308 sequences [M::worker_pipeline::307.4791.00] mapped 335322 sequences [M::worker_pipeline::317.5851.00] mapped 335330 sequences [M::worker_pipeline::327.5001.00] mapped 335300 sequences [M::worker_pipeline::337.9691.00] mapped 335342 sequences [M::worker_pipeline::348.4611.00] mapped 335282 sequences [M::worker_pipeline::358.7571.00] mapped 335340 sequences [M::worker_pipeline::368.5291.00] mapped 335278 sequences [M::worker_pipeline::378.4391.00] mapped 335340 sequences [M::worker_pipeline::388.7791.00] mapped 335338 sequences [M::worker_pipeline::398.5571.00] mapped 335322 sequences [M::worker_pipeline::408.5821.00] mapped 335278 sequences [M::worker_pipeline::418.7061.00] mapped 335358 sequences [M::worker_pipeline::428.7261.00] mapped 335248 sequences [M::worker_pipeline::438.9381.00] mapped 335306 sequences [M::worker_pipeline::449.7301.00] mapped 335398 sequences [M::worker_pipeline::460.1581.00] mapped 335400 sequences [M::worker_pipeline::471.0731.00] mapped 335352 sequences [M::worker_pipeline::481.0651.00] mapped 335342 sequences [M::worker_pipeline::491.3481.00] mapped 335460 sequences [M::worker_pipeline::501.6561.00] mapped 335388 sequences [M::worker_pipeline::511.8541.00] mapped 335318 sequences [M::worker_pipeline::522.0671.00] mapped 335288 sequences [M::worker_pipeline::532.3401.00] mapped 335316 sequences [M::worker_pipeline::542.7111.00] mapped 335276 sequences [M::worker_pipeline::552.8161.00] mapped 335274 sequences [M::worker_pipeline::563.3061.00] mapped 335298 sequences [M::worker_pipeline::574.0171.00] mapped 335310 sequences [M::worker_pipeline::584.3511.00] mapped 335308 sequences [M::worker_pipeline::594.8151.00] mapped 335310 sequences [M::worker_pipeline::605.0421.00] mapped 335372 sequences [M::worker_pipeline::614.9931.00] mapped 335394 sequences [M::worker_pipeline::625.8021.00] mapped 335278 sequences [M::worker_pipeline::636.2001.00] mapped 335274 sequences [M::worker_pipeline::646.5311.00] mapped 335302 sequences [M::worker_pipeline::657.1191.00] mapped 335314 sequences [M::worker_pipeline::667.3621.00] mapped 335390 sequences [M::worker_pipeline::678.0421.00] mapped 335266 sequences [M::worker_pipeline::688.1621.00] mapped 335388 sequences [M::worker_pipeline::698.2401.00] mapped 335288 sequences [M::worker_pipeline::710.7341.00] mapped 335418 sequences [M::worker_pipeline::721.2201.00] mapped 335308 sequences [M::worker_pipeline::731.0831.00] mapped 335314 sequences [M::worker_pipeline::741.4741.00] mapped 335330 sequences [M::worker_pipeline::751.9201.00] mapped 335322 sequences [M::worker_pipeline::762.2311.00] mapped 335294 sequences [M::worker_pipeline::772.5341.00] mapped 335308 sequences [M::worker_pipeline::782.9791.00] mapped 335298 sequences [M::worker_pipeline::792.7811.00] mapped 335296 sequences [M::worker_pipeline::802.7141.00] mapped 335284 sequences [M::worker_pipeline::813.1561.00] mapped 335342 sequences [M::worker_pipeline::822.9091.00] mapped 335312 sequences [M::worker_pipeline::833.0651.00] mapped 335390 sequences [M::worker_pipeline::842.9141.00] mapped 335310 sequences [M::worker_pipeline::852.8011.00] mapped 335358 sequences [M::worker_pipeline::862.8991.00] mapped 335344 sequences [M::worker_pipeline::872.7411.00] mapped 335340 sequences [M::worker_pipeline::882.9521.00] mapped 335344 sequences [M::worker_pipeline::892.8841.00] mapped 335326 sequences [M::worker_pipeline::902.7451.00] mapped 335354 sequences [M::worker_pipeline::912.6351.00] mapped 335392 sequences [M::worker_pipeline::922.7101.00] mapped 335356 sequences [M::worker_pipeline::932.7571.00] mapped 335306 sequences [M::worker_pipeline::943.1431.00] mapped 335350 sequences [M::worker_pipeline::953.7151.00] mapped 335320 sequences [M::worker_pipeline::963.7661.00] mapped 335326 sequences [M::worker_pipeline::973.3141.00] mapped 335296 sequences [M::worker_pipeline::983.2051.00] mapped 335270 sequences [M::worker_pipeline::993.4931.00] mapped 335286 sequences [M::worker_pipeline::1003.8041.00] mapped 335380 sequences [M::worker_pipeline::1013.8501.00] mapped 335350 sequences [M::worker_pipeline::1023.7781.00] mapped 335302 sequences [M::worker_pipeline::1033.8821.00] mapped 335264 sequences [M::worker_pipeline::1044.0441.00] mapped 335282 sequences [M::worker_pipeline::1054.3061.00] mapped 335308 sequences [M::worker_pipeline::1064.5721.00] mapped 335302 sequences [M::worker_pipeline::1074.7271.00] mapped 335328 sequences [M::worker_pipeline::1084.4651.00] mapped 335278 sequences [M::worker_pipeline::1094.4541.00] mapped 335344 sequences [M::worker_pipeline::1104.6121.00] mapped 335282 sequences [M::worker_pipeline::1115.2231.00] mapped 335278 sequences [M::worker_pipeline::1125.7521.00] mapped 335298 sequences [M::worker_pipeline::1136.4131.00] mapped 335316 sequences [M::worker_pipeline::1146.4901.00] mapped 335324 sequences [M::worker_pipeline::1156.5681.00] mapped 335278 sequences [M::worker_pipeline::1167.0081.00] mapped 335298 sequences [M::worker_pipeline::1177.7031.00] mapped 335324 sequences [M::worker_pipeline::1188.3011.00] mapped 335368 sequences [M::worker_pipeline::1198.7721.00] mapped 335298 sequences [M::worker_pipeline::1208.9611.00] mapped 335358 sequences [M::worker_pipeline::1219.0591.00] mapped 335388 sequences [M::worker_pipeline::1229.6471.00] mapped 335442 sequences [M::worker_pipeline::1239.9841.00] mapped 335312 sequences [M::worker_pipeline::1250.8531.00] mapped 335484 sequences [M::worker_pipeline::1261.3731.00] mapped 335310 sequences [M::worker_pipeline::1271.7021.00] mapped 335326 sequences [M::worker_pipeline::1282.0231.00] mapped 335346 sequences [M::worker_pipeline::1292.4561.00] mapped 335314 sequences [M::worker_pipeline::1302.8291.00] mapped 335342 sequences [M::worker_pipeline::1313.0491.00] mapped 335366 sequences [M::worker_pipeline::1323.5481.00] mapped 335358 sequences [M::worker_pipeline::1333.5191.00] mapped 335304 sequences [M::worker_pipeline::1343.9561.00] mapped 335322 sequences [M::worker_pipeline::1354.0441.00] mapped 335316 sequences [M::worker_pipeline::1363.9301.00] mapped 335282 sequences [M::worker_pipeline::1374.3081.00] mapped 335366 sequences [M::worker_pipeline::1384.4691.00] mapped 335258 sequences [M::worker_pipeline::1394.6121.00] mapped 335298 sequences [M::worker_pipeline::1404.8431.00] mapped 335284 sequences [M::worker_pipeline::1415.0251.00] mapped 335272 sequences [M::worker_pipeline::1425.1211.00] mapped 335266 sequences [M::worker_pipeline::1435.3011.00] mapped 335306 sequences [M::worker_pipeline::1445.4771.00] mapped 335260 sequences [M::worker_pipeline::1455.7681.00] mapped 335332 sequences [M::worker_pipeline::1465.6031.00] mapped 335322 sequences [M::worker_pipeline::1476.1291.00] mapped 335350 sequences [M::worker_pipeline::1486.5641.00] mapped 335350 sequences [M::worker_pipeline::1496.5991.00] mapped 335328 sequences [M::worker_pipeline::1507.0411.00] mapped 335380 sequences [M::worker_pipeline::1517.4881.00] mapped 335348 sequences [M::worker_pipeline::1527.6321.00] mapped 335298 sequences [M::worker_pipeline::1538.0061.00] mapped 335370 sequences [M::worker_pipeline::1547.9981.00] mapped 335290 sequences [M::worker_pipeline::1557.9881.00] mapped 335268 sequences [M::worker_pipeline::1568.0371.00] mapped 335366 sequences [M::worker_pipeline::1578.1331.00] mapped 335290 sequences [M::worker_pipeline::1588.3251.00] mapped 335350 sequences [M::worker_pipeline::1598.4571.00] mapped 335336 sequences [M::worker_pipeline::1608.4821.00] mapped 335296 sequences [M::worker_pipeline::1619.2391.00] mapped 335292 sequences [M::worker_pipeline::1629.7691.00] mapped 335246 sequences [M::worker_pipeline::1639.9691.00] mapped 335292 sequences [M::worker_pipeline::1650.4901.00] mapped 335338 sequences [M::worker_pipeline::1660.6811.00] mapped 335216 sequences [M::worker_pipeline::1671.0871.00] mapped 335270 sequences [M::worker_pipeline::1681.3351.00] mapped 335292 sequences [M::worker_pipeline::1691.0621.00] mapped 335224 sequences [M::worker_pipeline::1701.0851.00] mapped 335264 sequences [M::worker_pipeline::1711.3031.00] mapped 335400 sequences [M::worker_pipeline::1721.5721.00] mapped 335230 sequences [M::worker_pipeline::1731.9341.00] mapped 335304 sequences [M::worker_pipeline::1741.9781.00] mapped 335266 sequences [M::worker_pipeline::1751.9931.00] mapped 335288 sequences [M::worker_pipeline::1761.9331.00] mapped 335334 sequences [M::worker_pipeline::1772.0861.00] mapped 335346 sequences [M::worker_pipeline::1782.1801.00] mapped 335360 sequences [M::worker_pipeline::1792.3171.00] mapped 335324 sequences [M::worker_pipeline::1802.3571.00] mapped 335248 sequences [M::worker_pipeline::1812.4301.00] mapped 335330 sequences [M::worker_pipeline::1822.3461.00] mapped 335278 sequences [M::worker_pipeline::1832.5371.00] mapped 335322 sequences [M::worker_pipeline::1842.8851.00] mapped 335306 sequences [M::worker_pipeline::1853.1871.00] mapped 335308 sequences [M::worker_pipeline::1863.2781.00] mapped 335302 sequences [M::worker_pipeline::1873.3501.00] mapped 335288 sequences [M::worker_pipeline::1883.5711.00] mapped 335282 sequences [M::worker_pipeline::1893.5561.00] mapped 335300 sequences [M::worker_pipeline::1903.8481.00] mapped 335298 sequences [M::worker_pipeline::1914.0421.00] mapped 335266 sequences [M::worker_pipeline::1924.3911.00] mapped 335360 sequences [M::worker_pipeline::1934.3631.00] mapped 335330 sequences [M::worker_pipeline::1944.2651.00] mapped 335304 sequences [M::worker_pipeline::1954.2931.00] mapped 335344 sequences [M::worker_pipeline::1964.4461.00] mapped 335252 sequences [M::worker_pipeline::1974.5971.00] mapped 335368 sequences [M::worker_pipeline::1985.1101.00] mapped 335344 sequences [M::worker_pipeline::1995.1271.00] mapped 335316 sequences [M::worker_pipeline::2005.0271.00] mapped 335290 sequences [M::worker_pipeline::2015.0281.00] mapped 335328 sequences [M::worker_pipeline::2025.1971.00] mapped 335328 sequences [M::worker_pipeline::2035.4631.00] mapped 335300 sequences [M::worker_pipeline::2045.6711.00] mapped 335336 sequences [M::worker_pipeline::2055.6391.00] mapped 335250 sequences [M::worker_pipeline::2065.8491.00] mapped 335342 sequences [M::worker_pipeline::2075.8301.00] mapped 335266 sequences [M::worker_pipeline::2086.0291.00] mapped 335264 sequences [M::worker_pipeline::2096.0181.00] mapped 335298 sequences [M::worker_pipeline::2106.0161.00] mapped 335256 sequences [M::worker_pipeline::2116.3641.00] mapped 335264 sequences [M::worker_pipeline::2126.2131.00] mapped 335060 sequences [M::worker_pipeline::2136.5741.00] mapped 335018 sequences [M::worker_pipeline::2146.6681.00] mapped 334982 sequences [M::worker_pipeline::2156.9281.00] mapped 335002 sequences [M::worker_pipeline::2167.2401.00] mapped 335056 sequences [M::worker_pipeline::2177.1501.00] mapped 335036 sequences [M::worker_pipeline::2187.0701.00] mapped 335022 sequences [M::worker_pipeline::2197.0331.00] mapped 335044 sequences [M::worker_pipeline::2207.0181.00] mapped 335002 sequences [M::worker_pipeline::2217.0551.00] mapped 335066 sequences [M::worker_pipeline::2227.1131.00] mapped 335040 sequences [M::worker_pipeline::2236.9741.00] mapped 334990 sequences [M::worker_pipeline::2247.1211.00] mapped 335086 sequences [M::worker_pipeline::2257.3471.00] mapped 334992 sequences [M::worker_pipeline::2267.5541.00] mapped 335030 sequences [M::worker_pipeline::2277.3521.00] mapped 335006 sequences [M::worker_pipeline::2287.6581.00] mapped 335040 sequences [M::worker_pipeline::2297.7621.00] mapped 335048 sequences [M::worker_pipeline::2307.9451.00] mapped 335070 sequences [M::worker_pipeline::2318.0561.00] mapped 335032 sequences [M::worker_pipeline::2328.4851.00] mapped 335074 sequences [M::worker_pipeline::2338.8601.00] mapped 335014 sequences [M::worker_pipeline::2349.1771.00] mapped 335110 sequences [M::worker_pipeline::2359.2321.00] mapped 335014 sequences [M::worker_pipeline::2369.0621.00] mapped 334980 sequences [M::worker_pipeline::2379.0501.00] mapped 335020 sequences [M::worker_pipeline::2389.4471.00] mapped 335058 sequences [M::worker_pipeline::2399.6031.00] mapped 335052 sequences [M::worker_pipeline::2409.3961.00] mapped 334996 sequences [M::worker_pipeline::2419.1351.00] mapped 335038 sequences [M::worker_pipeline::2428.9991.00] mapped 335040 sequences [M::worker_pipeline::2438.9211.00] mapped 335050 sequences [M::worker_pipeline::2450.3531.00] mapped 335056 sequences [M::worker_pipeline::2460.1591.00] mapped 335010 sequences [M::worker_pipeline::2470.3751.00] mapped 335032 sequences [M::worker_pipeline::2480.3871.00] mapped 335014 sequences [M::worker_pipeline::2490.5401.00] mapped 335094 sequences [M::worker_pipeline::2500.6201.00] mapped 335048 sequences [M::worker_pipeline::2510.7951.00] mapped 335072 sequences [M::worker_pipeline::2520.7241.00] mapped 335084 sequences [M::worker_pipeline::2530.9141.00] mapped 335022 sequences [M::worker_pipeline::2540.8251.00] mapped 335000 sequences [M::worker_pipeline::2550.6521.00] mapped 335104 sequences [M::worker_pipeline::2560.6661.00] mapped 335030 sequences [M::worker_pipeline::2570.7001.00] mapped 335044 sequences [M::worker_pipeline::2581.2011.00] mapped 335042 sequences [M::worker_pipeline::2591.5911.00] mapped 334968 sequences [M::worker_pipeline::2601.7831.00] mapped 335056 sequences [M::worker_pipeline::2611.5871.00] mapped 335016 sequences [M::worker_pipeline::2621.8391.00] mapped 334992 sequences [M::worker_pipeline::2632.0881.00] mapped 334990 sequences [M::worker_pipeline::2642.3731.00] mapped 334996 sequences [M::worker_pipeline::2652.1631.00] mapped 335024 sequences [M::worker_pipeline::2662.2671.00] mapped 335000 sequences [M::worker_pipeline::2672.1331.00] mapped 335020 sequences [M::worker_pipeline::2682.5671.00] mapped 335032 sequences [M::worker_pipeline::2692.6581.00] mapped 335056 sequences [M::worker_pipeline::2703.1101.00] mapped 335006 sequences [M::worker_pipeline::2713.3001.00] mapped 335070 sequences [M::worker_pipeline::2723.5481.00] mapped 335042 sequences [M::worker_pipeline::2733.7131.00] mapped 335034 sequences [M::worker_pipeline::2744.0541.00] mapped 335030 sequences [M::worker_pipeline::2754.3091.00] mapped 335062 sequences [M::worker_pipeline::2764.2111.00] mapped 335020 sequences [M::worker_pipeline::2774.3331.00] mapped 335052 sequences [M::worker_pipeline::2784.1381.00] mapped 335018 sequences [M::worker_pipeline::2794.3001.00] mapped 334998 sequences [M::worker_pipeline::2804.3051.00] mapped 335014 sequences [M::worker_pipeline::2814.1421.00] mapped 334982 sequences [M::worker_pipeline::2824.1221.00] mapped 334982 sequences [M::worker_pipeline::2834.0701.00] mapped 335034 sequences [M::worker_pipeline::2843.9031.00] mapped 335036 sequences [M::worker_pipeline::2853.8011.00] mapped 335048 sequences [M::worker_pipeline::2863.4651.00] mapped 335024 sequences [M::worker_pipeline::2873.6861.00] mapped 335028 sequences [M::worker_pipeline::2883.7811.00] mapped 335000 sequences [M::worker_pipeline::2893.8071.00] mapped 335056 sequences [M::worker_pipeline::2903.9021.00] mapped 334990 sequences [M::worker_pipeline::2913.7501.00] mapped 334988 sequences [M::worker_pipeline::2923.8731.00] mapped 335050 sequences [M::worker_pipeline::2934.0231.00] mapped 334978 sequences [M::worker_pipeline::2943.9561.00] mapped 334976 sequences [M::worker_pipeline::2953.7871.00] mapped 335040 sequences [M::worker_pipeline::2963.9451.00] mapped 335002 sequences [M::worker_pipeline::2973.9151.00] mapped 335044 sequences [M::worker_pipeline::2983.7761.00] mapped 334998 sequences [M::worker_pipeline::2994.0321.00] mapped 335014 sequences [M::worker_pipeline::3003.9151.00] mapped 335034 sequences [M::worker_pipeline::3014.5891.00] mapped 335008 sequences [M::worker_pipeline::3024.4071.00] mapped 335030 sequences [M::worker_pipeline::3034.2471.00] mapped 335006 sequences [M::worker_pipeline::3044.2131.00] mapped 334982 sequences [M::worker_pipeline::3054.5631.00] mapped 334996 sequences [M::worker_pipeline::3064.6711.00] mapped 335046 sequences [M::worker_pipeline::3074.6341.00] mapped 334986 sequences [M::worker_pipeline::3084.8301.00] mapped 334972 sequences [M::worker_pipeline::3094.4301.00] mapped 335018 sequences [M::worker_pipeline::3104.2761.00] mapped 335034 sequences [M::worker_pipeline::3114.3161.00] mapped 335018 sequences [M::worker_pipeline::3124.4491.00] mapped 334978 sequences [M::worker_pipeline::3134.7451.00] mapped 335072 sequences [M::worker_pipeline::3144.4941.00] mapped 335006 sequences [M::worker_pipeline::3154.3871.00] mapped 334978 sequences [M::worker_pipeline::3164.1171.00] mapped 335106 sequences [M::worker_pipeline::3174.1741.00] mapped 335192 sequences [M::worker_pipeline::3184.2351.00] mapped 335148 sequences [M::worker_pipeline::3194.5811.00] mapped 335196 sequences [M::worker_pipeline::3204.8341.00] mapped 335204 sequences [M::worker_pipeline::3214.1961.00] mapped 335214 sequences [M::worker_pipeline::3224.2721.00] mapped 335240 sequences [M::worker_pipeline::3234.2351.00] mapped 335172 sequences [M::worker_pipeline::3244.2571.00] mapped 335176 sequences [M::worker_pipeline::3254.0101.00] mapped 335236 sequences [M::worker_pipeline::3263.9301.00] mapped 335146 sequences [M::worker_pipeline::3273.8021.00] mapped 335264 sequences [M::worker_pipeline::3283.8941.00] mapped 335206 sequences [M::worker_pipeline::3293.7001.00] mapped 335228 sequences [M::worker_pipeline::3304.0951.00] mapped 335232 sequences [M::worker_pipeline::3314.2651.00] mapped 335156 sequences [M::worker_pipeline::3324.4781.00] mapped 335186 sequences [M::worker_pipeline::3334.4151.00] mapped 335252 sequences [M::worker_pipeline::3344.4081.00] mapped 335220 sequences [M::worker_pipeline::3354.7491.00] mapped 335248 sequences [M::worker_pipeline::3364.7831.00] mapped 335288 sequences [M::worker_pipeline::3374.9251.00] mapped 335162 sequences [M::worker_pipeline::3385.0101.00] mapped 335170 sequences [M::worker_pipeline::3394.4931.00] mapped 335206 sequences [M::worker_pipeline::3404.3621.00] mapped 335182 sequences [M::worker_pipeline::3414.3911.00] mapped 335186 sequences [M::worker_pipeline::3424.4911.00] mapped 335148 sequences [M::worker_pipeline::3434.4481.00] mapped 335194 sequences [M::worker_pipeline::3444.2601.00] mapped 335196 sequences [M::worker_pipeline::3454.1571.00] mapped 335210 sequences [M::worker_pipeline::3465.5961.00] mapped 335254 sequences [M::worker_pipeline::3475.5131.00] mapped 335178 sequences [M::worker_pipeline::3485.5391.00] mapped 335226 sequences [M::worker_pipeline::3495.3401.00] mapped 335204 sequences [M::worker_pipeline::3505.1411.00] mapped 335186 sequences [M::worker_pipeline::3514.6571.00] mapped 335246 sequences [M::worker_pipeline::3524.3981.00] mapped 335210 sequences [M::worker_pipeline::3534.1491.00] mapped 335206 sequences [M::worker_pipeline::3544.2111.00] mapped 335210 sequences [M::worker_pipeline::3553.9651.00] mapped 335188 sequences [M::worker_pipeline::3563.7041.00] mapped 335144 sequences [M::worker_pipeline::3573.5461.00] mapped 335164 sequences [M::worker_pipeline::3583.1361.00] mapped 335228 sequences [M::worker_pipeline::3593.0201.00] mapped 335174 sequences [M::worker_pipeline::3602.8951.00] mapped 335148 sequences [M::worker_pipeline::3612.9131.00] mapped 335166 sequences [M::worker_pipeline::3622.7881.00] mapped 335218 sequences [M::worker_pipeline::3632.8091.00] mapped 335184 sequences [M::worker_pipeline::3642.6561.00] mapped 335242 sequences [M::worker_pipeline::3652.8551.00] mapped 335194 sequences [M::worker_pipeline::3662.8701.00] mapped 335200 sequences [M::worker_pipeline::3672.6961.00] mapped 335172 sequences [M::worker_pipeline::3682.9221.00] mapped 335178 sequences [M::worker_pipeline::3692.9461.00] mapped 335234 sequences [M::worker_pipeline::3702.6311.00] mapped 335216 sequences [M::worker_pipeline::3712.6581.00] mapped 335210 sequences [M::worker_pipeline::3722.6481.00] mapped 335178 sequences [M::worker_pipeline::3732.6351.00] mapped 335246 sequences [M::worker_pipeline::3742.5981.00] mapped 335180 sequences [M::worker_pipeline::3752.4341.00] mapped 335164 sequences [M::worker_pipeline::3762.0221.00] mapped 335174 sequences [M::worker_pipeline::3771.9491.00] mapped 335216 sequences [M::worker_pipeline::3781.8181.00] mapped 335144 sequences [M::worker_pipeline::3791.6881.00] mapped 335182 sequences [M::worker_pipeline::3801.6341.00] mapped 335210 sequences [M::worker_pipeline::3811.2041.00] mapped 335172 sequences [M::worker_pipeline::3821.1041.00] mapped 335234 sequences [M::worker_pipeline::3830.8141.00] mapped 335208 sequences [M::worker_pipeline::3840.4151.00] mapped 335168 sequences [M::worker_pipeline::3850.1701.00] mapped 335134 sequences [M::worker_pipeline::3860.1931.00] mapped 335142 sequences [M::worker_pipeline::3870.0831.00] mapped 335168 sequences [M::worker_pipeline::3879.7601.00] mapped 335170 sequences [M::worker_pipeline::3889.7401.00] mapped 335152 sequences [M::worker_pipeline::3899.6701.00] mapped 335152 sequences [M::worker_pipeline::3909.6901.00] mapped 335220 sequences [M::worker_pipeline::3919.5391.00] mapped 335204 sequences [M::worker_pipeline::3929.4191.00] mapped 335194 sequences [M::worker_pipeline::3939.0691.00] mapped 335178 sequences [M::worker_pipeline::3949.0721.00] mapped 335210 sequences [M::worker_pipeline::3959.3441.00] mapped 335140 sequences [M::worker_pipeline::3969.3371.00] mapped 335154 sequences [M::worker_pipeline::3979.1091.00] mapped 335204 sequences [M::worker_pipeline::3989.2701.00] mapped 335162 sequences [M::worker_pipeline::3999.1371.00] mapped 335152 sequences [M::worker_pipeline::4008.9821.00] mapped 335138 sequences [M::worker_pipeline::4018.8871.00] mapped 335206 sequences [M::worker_pipeline::4029.3811.00] mapped 335134 sequences [M::worker_pipeline::4039.4131.00] mapped 335152 sequences [M::worker_pipeline::4050.0061.00] mapped 335244 sequences [M::worker_pipeline::4059.5501.00] mapped 335170 sequences [M::worker_pipeline::4069.0681.00] mapped 335240 sequences [M::worker_pipeline::4079.0931.00] mapped 335146 sequences [M::worker_pipeline::4089.2401.00] mapped 335188 sequences [M::worker_pipeline::4099.3531.00] mapped 334994 sequences [M::worker_pipeline::4109.5971.00] mapped 334998 sequences [M::worker_pipeline::4119.7191.00] mapped 334968 sequences [M::worker_pipeline::4129.8631.00] mapped 335020 sequences [M::worker_pipeline::4139.9631.00] mapped 334994 sequences [M::worker_pipeline::4149.7471.00] mapped 334948 sequences [M::worker_pipeline::4159.8861.00] mapped 334940 sequences [M::worker_pipeline::4169.9631.00] mapped 334998 sequences [M::worker_pipeline::4179.8931.00] mapped 335012 sequences [M::worker_pipeline::4189.4421.00] mapped 334994 sequences [M::worker_pipeline::4199.5411.00] mapped 335030 sequences [M::worker_pipeline::4209.5621.00] mapped 334942 sequences [M::worker_pipeline::4219.5391.00] mapped 335010 sequences [M::worker_pipeline::4229.0041.00] mapped 334990 sequences [M::worker_pipeline::4238.9151.00] mapped 334988 sequences [M::worker_pipeline::4248.7641.00] mapped 334952 sequences [M::worker_pipeline::4258.7281.00] mapped 334968 sequences [M::worker_pipeline::4268.9511.00] mapped 335022 sequences [M::worker_pipeline::4279.1441.00] mapped 335020 sequences [M::worker_pipeline::4289.2551.00] mapped 335060 sequences [M::worker_pipeline::4299.0931.00] mapped 334976 sequences [M::worker_pipeline::4309.0691.00] mapped 335008 sequences [M::worker_pipeline::4319.1951.00] mapped 334982 sequences [M::worker_pipeline::4328.9361.00] mapped 334914 sequences [M::worker_pipeline::4339.0261.00] mapped 335048 sequences [M::worker_pipeline::4349.0221.00] mapped 334966 sequences [M::worker_pipeline::4359.1141.00] mapped 335016 sequences [M::worker_pipeline::4368.5521.00] mapped 335026 sequences [M::worker_pipeline::4379.7041.00] mapped 335022 sequences [M::worker_pipeline::4389.8471.00] mapped 334976 sequences [M::worker_pipeline::4399.7821.00] mapped 334974 sequences [M::worker_pipeline::4409.8591.00] mapped 334954 sequences [M::worker_pipeline::4419.9421.00] mapped 335010 sequences [M::worker_pipeline::4430.1731.00] mapped 335004 sequences [M::worker_pipeline::4440.2911.00] mapped 335012 sequences [M::worker_pipeline::4450.4011.00] mapped 334992 sequences [M::worker_pipeline::4460.3711.00] mapped 335012 sequences [M::worker_pipeline::4470.4641.00] mapped 335002 sequences [M::worker_pipeline::4480.5481.00] mapped 334988 sequences [M::worker_pipeline::4490.1861.00] mapped 334974 sequences [M::worker_pipeline::4500.4501.00] mapped 334986 sequences [M::worker_pipeline::4510.6881.00] mapped 334980 sequences [M::worker_pipeline::4520.6441.00] mapped 334968 sequences [M::worker_pipeline::4530.7401.00] mapped 334958 sequences [M::worker_pipeline::4540.6621.00] mapped 334938 sequences [M::worker_pipeline::4550.5351.00] mapped 334960 sequences [M::worker_pipeline::4560.5911.00] mapped 335000 sequences [M::worker_pipeline::4570.5211.00] mapped 335008 sequences [M::worker_pipeline::4580.5061.00] mapped 335016 sequences [M::worker_pipeline::4590.5581.00] mapped 334998 sequences [M::worker_pipeline::4600.4261.00] mapped 334972 sequences [M::worker_pipeline::4610.5731.00] mapped 335066 sequences [M::worker_pipeline::4620.4831.00] mapped 335054 sequences [M::worker_pipeline::4630.8141.00] mapped 334932 sequences [M::worker_pipeline::4641.0381.00] mapped 335026 sequences [M::worker_pipeline::4651.1261.00] mapped 334954 sequences [M::worker_pipeline::4661.2351.00] mapped 334916 sequences [M::worker_pipeline::4670.9091.00] mapped 334980 sequences [M::worker_pipeline::4680.8281.00] mapped 334936 sequences [M::worker_pipeline::4690.6791.00] mapped 334930 sequences [M::worker_pipeline::4700.8211.00] mapped 334972 sequences [M::worker_pipeline::4710.7171.00] mapped 334966 sequences [M::worker_pipeline::4720.5281.00] mapped 335022 sequences [M::worker_pipeline::4730.4221.00] mapped 335002 sequences [M::worker_pipeline::4740.3181.00] mapped 334974 sequences [M::worker_pipeline::4750.3401.00] mapped 334998 sequences [M::worker_pipeline::4760.1171.00] mapped 334964 sequences [M::worker_pipeline::4769.9741.00] mapped 334968 sequences [M::worker_pipeline::4779.9971.00] mapped 334930 sequences [M::worker_pipeline::4790.0661.00] mapped 334952 sequences [M::worker_pipeline::4799.6181.00] mapped 334938 sequences [M::worker_pipeline::4809.4951.00] mapped 334970 sequences [M::worker_pipeline::4819.2511.00] mapped 334976 sequences [M::worker_pipeline::4829.3981.00] mapped 334986 sequences [M::worker_pipeline::4839.2921.00] mapped 334988 sequences [M::worker_pipeline::4848.9811.00] mapped 334974 sequences [M::worker_pipeline::4858.8931.00] mapped 334934 sequences [M::worker_pipeline::4868.8501.00] mapped 334996 sequences [M::worker_pipeline::4879.0181.00] mapped 335018 sequences [M::worker_pipeline::4888.9151.00] mapped 335004 sequences [M::worker_pipeline::4898.9211.00] mapped 334960 sequences [M::worker_pipeline::4909.1291.00] mapped 334984 sequences [M::worker_pipeline::4918.8091.00] mapped 334918 sequences [M::worker_pipeline::4928.7081.00] mapped 334966 sequences [M::worker_pipeline::4939.1351.00] mapped 334992 sequences [M::worker_pipeline::4949.2261.00] mapped 335004 sequences [M::worker_pipeline::4959.2391.00] mapped 335010 sequences [M::worker_pipeline::4969.2461.00] mapped 334958 sequences [M::worker_pipeline::4979.4701.00] mapped 334950 sequences [M::worker_pipeline::4989.4791.00] mapped 334966 sequences [M::worker_pipeline::4999.6171.00] mapped 335006 sequences [M::worker_pipeline::5010.5041.00] mapped 335048 sequences [M::worker_pipeline::5020.8761.00] mapped 335032 sequences [M::worker_pipeline::5031.2981.00] mapped 335062 sequences [M::worker_pipeline::5041.3191.00] mapped 335066 sequences [M::worker_pipeline::5051.7621.00] mapped 335052 sequences [M::worker_pipeline::5062.2801.00] mapped 335048 sequences [M::worker_pipeline::5072.0871.00] mapped 335048 sequences [M::worker_pipeline::5082.1471.00] mapped 335068 sequences [M::worker_pipeline::5092.5901.00] mapped 335116 sequences [M::worker_pipeline::5103.0871.00] mapped 335076 sequences [M::worker_pipeline::5113.2721.00] mapped 335026 sequences [M::worker_pipeline::5123.1401.00] mapped 335044 sequences [M::worker_pipeline::5133.3751.00] mapped 335046 sequences [M::worker_pipeline::5143.5911.00] mapped 335028 sequences [M::worker_pipeline::5153.5961.00] mapped 335060 sequences [M::worker_pipeline::5163.4211.00] mapped 335060 sequences [M::worker_pipeline::5173.6101.00] mapped 335028 sequences [M::worker_pipeline::5184.0171.00] mapped 335066 sequences [M::worker_pipeline::5194.1381.00] mapped 335066 sequences [M::worker_pipeline::5204.5551.00] mapped 335120 sequences [M::worker_pipeline::5214.6521.00] mapped 335082 sequences [M::worker_pipeline::5224.8371.00] mapped 335142 sequences [M::worker_pipeline::5235.0441.00] mapped 335030 sequences [M::worker_pipeline::5244.9661.00] mapped 335092 sequences [M::worker_pipeline::5255.1821.00] mapped 335046 sequences [M::worker_pipeline::5265.5001.00] mapped 335032 sequences [M::worker_pipeline::5275.3511.00] mapped 335086 sequences [M::worker_pipeline::5285.4231.00] mapped 335076 sequences [M::worker_pipeline::5295.4921.00] mapped 334984 sequences [M::worker_pipeline::5305.7931.00] mapped 335066 sequences [M::worker_pipeline::5316.2761.00] mapped 335058 sequences [M::worker_pipeline::5326.7731.00] mapped 335060 sequences [M::worker_pipeline::5337.9551.00] mapped 335122 sequences [M::worker_pipeline::5348.1331.00] mapped 335032 sequences [M::worker_pipeline::5358.3731.00] mapped 335050 sequences [M::worker_pipeline::5368.4821.00] mapped 335068 sequences [M::worker_pipeline::5378.7241.00] mapped 335082 sequences [M::worker_pipeline::5388.6421.00] mapped 335106 sequences [M::worker_pipeline::5398.7141.00] mapped 335042 sequences [M::worker_pipeline::5409.2381.00] mapped 335076 sequences [M::worker_pipeline::5419.1241.00] mapped 335044 sequences [M::worker_pipeline::5429.2991.00] mapped 335074 sequences [M::worker_pipeline::5439.6381.00] mapped 335098 sequences [M::worker_pipeline::5449.8631.00] mapped 335040 sequences [M::worker_pipeline::5459.8341.00] mapped 335070 sequences [M::worker_pipeline::5470.2591.00] mapped 335102 sequences [M::worker_pipeline::5480.2731.00] mapped 335072 sequences [M::worker_pipeline::5490.3921.00] mapped 335018 sequences [M::worker_pipeline::5500.9101.00] mapped 335042 sequences [M::worker_pipeline::5511.3031.00] mapped 335070 sequences [M::worker_pipeline::5521.0631.00] mapped 335020 sequences [M::worker_pipeline::5531.1721.00] mapped 335056 sequences [M::worker_pipeline::5541.2491.00] mapped 335010 sequences [M::worker_pipeline::5551.4091.00] mapped 335064 sequences [M::worker_pipeline::5561.6231.00] mapped 335062 sequences [M::worker_pipeline::5572.0351.00] mapped 335106 sequences [M::worker_pipeline::5582.2671.00] mapped 335072 sequences [M::worker_pipeline::5592.7611.00] mapped 335114 sequences [M::worker_pipeline::5603.0551.00] mapped 335086 sequences [M::worker_pipeline::5613.1891.00] mapped 335048 sequences [M::worker_pipeline::5623.3101.00] mapped 335052 sequences [M::worker_pipeline::5633.9931.00] mapped 335060 sequences [M::worker_pipeline::5643.9061.00] mapped 335028 sequences [M::worker_pipeline::5654.2251.00] mapped 335044 sequences [M::worker_pipeline::5664.3381.00] mapped 335014 sequences [M::worker_pipeline::5675.0321.00] mapped 335076 sequences [M::worker_pipeline::5685.1441.00] mapped 335036 sequences [M::worker_pipeline::5695.1661.00] mapped 335050 sequences [M::worker_pipeline::5705.2181.00] mapped 335090 sequences [M::worker_pipeline::5715.4491.00] mapped 335030 sequences [M::worker_pipeline::5725.2351.00] mapped 335036 sequences [M::worker_pipeline::5735.5391.00] mapped 335076 sequences [M::worker_pipeline::5745.5521.00] mapped 335074 sequences [M::worker_pipeline::5755.9371.00] mapped 335056 sequences [M::worker_pipeline::5765.6951.00] mapped 335018 sequences [M::worker_pipeline::5775.6131.00] mapped 335020 sequences [M::worker_pipeline::5785.5761.00] mapped 335038 sequences [M::worker_pipeline::5795.5581.00] mapped 335034 sequences [M::worker_pipeline::5806.0171.00] mapped 335024 sequences [M::worker_pipeline::5816.1921.00] mapped 334988 sequences [M::worker_pipeline::5825.8971.00] mapped 335002 sequences [M::worker_pipeline::5836.2111.00] mapped 335064 sequences [M::worker_pipeline::5846.2221.00] mapped 335066 sequences [M::worker_pipeline::5856.7781.00] mapped 335066 sequences [M::worker_pipeline::5866.9691.00] mapped 335052 sequences [M::worker_pipeline::5876.9821.00] mapped 335080 sequences [M::worker_pipeline::5886.8821.00] mapped 335036 sequences [M::worker_pipeline::5897.1771.00] mapped 335074 sequences [M::worker_pipeline::5907.3341.00] mapped 335062 sequences [M::worker_pipeline::5917.3151.00] mapped 335044 sequences [M::worker_pipeline::5927.4501.00] mapped 335002 sequences [M::worker_pipeline::5937.5991.00] mapped 335014 sequences [M::worker_pipeline::5947.6931.00] mapped 335056 sequences [M::worker_pipeline::5957.7261.00] mapped 335044 sequences [M::worker_pipeline::5967.9231.00] mapped 335056 sequences [M::worker_pipeline::5977.9501.00] mapped 335040 sequences [M::worker_pipeline::5988.2441.00] mapped 335082 sequences [M::worker_pipeline::5998.4141.00] mapped 335072 sequences [M::worker_pipeline::6008.1391.00] mapped 335006 sequences [M::worker_pipeline::6018.0981.00] mapped 335060 sequences [M::worker_pipeline::6028.1611.00] mapped 335044 sequences [M::worker_pipeline::6038.1711.00] mapped 335000 sequences [M::worker_pipeline::6048.1841.00] mapped 335212 sequences [M::worker_pipeline::6058.0871.00] mapped 335412 sequences [M::worker_pipeline::6067.9531.00] mapped 335376 sequences [M::worker_pipeline::6078.3181.00] mapped 335484 sequences [M::worker_pipeline::6088.6981.00] mapped 335372 sequences [M::worker_pipeline::6098.6641.00] mapped 335374 sequences [M::worker_pipeline::6109.1471.00] mapped 335452 sequences [M::worker_pipeline::6119.3011.00] mapped 335372 sequences [M::worker_pipeline::6129.0661.00] mapped 335404 sequences [M::worker_pipeline::6138.9411.00] mapped 335430 sequences [M::worker_pipeline::6149.0071.00] mapped 335408 sequences [M::worker_pipeline::6158.6741.00] mapped 335402 sequences [M::worker_pipeline::6168.6121.00] mapped 335356 sequences [M::worker_pipeline::6178.2791.00] mapped 335424 sequences [M::worker_pipeline::6188.0611.00] mapped 335368 sequences [M::worker_pipeline::6198.0881.00] mapped 335372 sequences [M::worker_pipeline::6208.2821.00] mapped 335408 sequences [M::worker_pipeline::6218.5521.00] mapped 335428 sequences [M::worker_pipeline::6228.6741.00] mapped 335448 sequences [M::worker_pipeline::6239.1381.00] mapped 335582 sequences [M::worker_pipeline::6248.9271.00] mapped 335396 sequences [M::worker_pipeline::6259.0211.00] mapped 335428 sequences [M::worker_pipeline::6269.2031.00] mapped 335422 sequences [M::worker_pipeline::6279.2721.00] mapped 335400 sequences [M::worker_pipeline::6289.0691.00] mapped 335320 sequences [M::worker_pipeline::6299.0611.00] mapped 335398 sequences [M::worker_pipeline::6308.8891.00] mapped 335406 sequences [M::worker_pipeline::6318.8071.00] mapped 335362 sequences [M::worker_pipeline::6329.8381.00] mapped 335416 sequences [M::worker_pipeline::6339.6861.00] mapped 335406 sequences [M::worker_pipeline::6349.4381.00] mapped 335410 sequences [M::worker_pipeline::6359.2871.00] mapped 335406 sequences [M::worker_pipeline::6369.1371.00] mapped 335446 sequences [M::worker_pipeline::6378.9061.00] mapped 335490 sequences [M::worker_pipeline::6388.6391.00] mapped 335408 sequences [M::worker_pipeline::6398.4821.00] mapped 335384 sequences [M::worker_pipeline::6408.6171.00] mapped 335444 sequences [M::worker_pipeline::6418.6561.00] mapped 335476 sequences [M::worker_pipeline::6428.3971.00] mapped 335384 sequences [M::worker_pipeline::6438.3511.00] mapped 335414 sequences [M::worker_pipeline::6448.4601.00] mapped 335378 sequences [M::worker_pipeline::6458.2321.00] mapped 335366 sequences [M::worker_pipeline::6468.1611.00] mapped 335352 sequences [M::worker_pipeline::6478.4351.00] mapped 335392 sequences [M::worker_pipeline::6488.3181.00] mapped 335412 sequences [M::worker_pipeline::6498.0651.00] mapped 335386 sequences [M::worker_pipeline::6508.0751.00] mapped 335350 sequences [M::worker_pipeline::6517.9011.00] mapped 335422 sequences [M::worker_pipeline::6527.9861.00] mapped 335436 sequences [M::worker_pipeline::6537.7761.00] mapped 335404 sequences [M::worker_pipeline::6547.8951.00] mapped 335424 sequences [M::worker_pipeline::6557.7711.00] mapped 335438 sequences [M::worker_pipeline::6567.4101.00] mapped 335372 sequences [M::worker_pipeline::6578.0681.00] mapped 335440 sequences [M::worker_pipeline::6588.0901.00] mapped 335404 sequences [M::worker_pipeline::6598.4601.00] mapped 335338 sequences [M::worker_pipeline::6608.6111.00] mapped 335388 sequences [M::worker_pipeline::6618.7201.00] mapped 335430 sequences [M::worker_pipeline::6628.6051.00] mapped 335422 sequences [M::worker_pipeline::6638.7191.00] mapped 335392 sequences [M::worker_pipeline::6648.8251.00] mapped 335438 sequences [M::worker_pipeline::6658.8071.00] mapped 335428 sequences [M::worker_pipeline::6668.5081.00] mapped 335434 sequences [M::worker_pipeline::6678.1701.00] mapped 335400 sequences [M::worker_pipeline::6687.9671.00] mapped 335398 sequences [M::worker_pipeline::6698.0821.00] mapped 335440 sequences [M::worker_pipeline::6708.2091.00] mapped 335370 sequences [M::worker_pipeline::6718.0781.00] mapped 335372 sequences [M::worker_pipeline::6727.6891.00] mapped 335352 sequences [M::worker_pipeline::6737.1401.00] mapped 335310 sequences [M::worker_pipeline::6746.9571.00] mapped 335346 sequences [M::worker_pipeline::6756.8381.00] mapped 335418 sequences [M::worker_pipeline::6766.7741.00] mapped 335442 sequences [M::worker_pipeline::6776.3161.00] mapped 335396 sequences [M::worker_pipeline::6786.0821.00] mapped 335356 sequences [M::worker_pipeline::6795.9541.00] mapped 335410 sequences [M::worker_pipeline::6805.8061.00] mapped 335372 sequences [M::worker_pipeline::6815.6181.00] mapped 335338 sequences [M::worker_pipeline::6825.5281.00] mapped 335378 sequences [M::worker_pipeline::6835.2071.00] mapped 335322 sequences [M::worker_pipeline::6844.9671.00] mapped 335386 sequences [M::worker_pipeline::6854.8331.00] mapped 335394 sequences [M::worker_pipeline::6864.7451.00] mapped 335372 sequences [M::worker_pipeline::6875.1061.00] mapped 335458 sequences [M::worker_pipeline::6885.1901.00] mapped 335422 sequences [M::worker_pipeline::6894.8801.00] mapped 335382 sequences [M::worker_pipeline::6905.2511.00] mapped 335358 sequences [M::worker_pipeline::6914.9641.00] mapped 335336 sequences [M::worker_pipeline::6924.6881.00] mapped 334954 sequences [M::worker_pipeline::6934.6261.00] mapped 334888 sequences [M::worker_pipeline::6944.7201.00] mapped 334918 sequences [M::worker_pipeline::6954.8201.00] mapped 334896 sequences [M::worker_pipeline::6964.8421.00] mapped 334982 sequences [M::worker_pipeline::6974.2401.00] mapped 334868 sequences [M::worker_pipeline::6983.9391.00] mapped 334888 sequences [M::worker_pipeline::6994.0941.00] mapped 334864 sequences [M::worker_pipeline::7003.8071.00] mapped 334880 sequences [M::worker_pipeline::7013.7581.00] mapped 334888 sequences [M::worker_pipeline::7023.5841.00] mapped 334880 sequences [M::worker_pipeline::7033.6551.00] mapped 334932 sequences [M::worker_pipeline::7043.6201.00] mapped 334904 sequences [M::worker_pipeline::7053.4161.00] mapped 334892 sequences [M::worker_pipeline::7063.4051.00] mapped 334894 sequences [M::worker_pipeline::7073.0801.00] mapped 334900 sequences [M::worker_pipeline::7082.9801.00] mapped 334882 sequences [M::worker_pipeline::7092.6311.00] mapped 334888 sequences [M::worker_pipeline::7102.4191.00] mapped 334948 sequences [M::worker_pipeline::7112.3761.00] mapped 334920 sequences [M::worker_pipeline::7122.3591.00] mapped 334912 sequences [M::worker_pipeline::7132.3741.00] mapped 334906 sequences [M::worker_pipeline::7142.3421.00] mapped 334906 sequences [M::worker_pipeline::7152.0311.00] mapped 334934 sequences [M::worker_pipeline::7161.9691.00] mapped 334910 sequences [M::worker_pipeline::7171.9471.00] mapped 334994 sequences [M::worker_pipeline::7181.6311.00] mapped 334884 sequences [M::worker_pipeline::7191.4581.00] mapped 334866 sequences [M::worker_pipeline::7201.3221.00] mapped 334876 sequences [M::worker_pipeline::7211.3151.00] mapped 334922 sequences [M::worker_pipeline::7221.1641.00] mapped 334890 sequences [M::worker_pipeline::7231.1191.00] mapped 334896 sequences [M::worker_pipeline::7241.1381.00] mapped 334936 sequences [M::worker_pipeline::7251.1841.00] mapped 334846 sequences [M::worker_pipeline::7261.1301.00] mapped 334908 sequences [M::worker_pipeline::7271.0821.00] mapped 334892 sequences [M::worker_pipeline::7280.8941.00] mapped 334908 sequences [M::worker_pipeline::7290.7351.00] mapped 334934 sequences [M::worker_pipeline::7301.6401.00] mapped 334982 sequences [M::worker_pipeline::7311.7181.00] mapped 334958 sequences [M::worker_pipeline::7321.7401.00] mapped 334900 sequences [M::worker_pipeline::7331.4251.00] mapped 334910 sequences [M::worker_pipeline::7340.9611.00] mapped 334896 sequences [M::worker_pipeline::7350.6891.00] mapped 334928 sequences [M::worker_pipeline::7360.6271.00] mapped 334914 sequences [M::worker_pipeline::7370.5411.00] mapped 334900 sequences [M::worker_pipeline::7380.4701.00] mapped 334950 sequences [M::worker_pipeline::7390.3031.00] mapped 334904 sequences [M::worker_pipeline::7400.1621.00] mapped 334904 sequences [M::worker_pipeline::7409.9681.00] mapped 334926 sequences [M::worker_pipeline::7419.9811.00] mapped 334930 sequences [M::worker_pipeline::7429.8231.00] mapped 334872 sequences [M::worker_pipeline::7439.7141.00] mapped 334890 sequences [M::worker_pipeline::7449.6171.00] mapped 334928 sequences [M::worker_pipeline::7459.1811.00] mapped 334890 sequences [M::worker_pipeline::7469.1841.00] mapped 334920 sequences [M::worker_pipeline::7478.8451.00] mapped 334850 sequences [M::worker_pipeline::7488.7411.00] mapped 334896 sequences [M::worker_pipeline::7498.7421.00] mapped 334974 sequences [M::worker_pipeline::7508.3571.00] mapped 334886 sequences [M::worker_pipeline::7518.0621.00] mapped 334892 sequences [M::worker_pipeline::7527.9801.00] mapped 334870 sequences [M::worker_pipeline::7538.0271.00] mapped 334878 sequences [M::worker_pipeline::7547.9671.00] mapped 334892 sequences [M::worker_pipeline::7557.6861.00] mapped 334938 sequences [M::worker_pipeline::7567.8041.00] mapped 334928 sequences [M::worker_pipeline::7577.8271.00] mapped 334914 sequences [M::worker_pipeline::7587.7001.00] mapped 334928 sequences [M::worker_pipeline::7597.4931.00] mapped 334956 sequences [M::worker_pipeline::7607.5221.00] mapped 334930 sequences [M::worker_pipeline::7617.3901.00] mapped 334920 sequences [M::worker_pipeline::7627.2231.00] mapped 334942 sequences [M::worker_pipeline::7636.9341.00] mapped 334944 sequences [M::worker_pipeline::7646.5261.00] mapped 334916 sequences [M::worker_pipeline::7656.2681.00] mapped 334884 sequences [M::worker_pipeline::7666.0821.00] mapped 334850 sequences [M::worker_pipeline::7676.0081.00] mapped 334894 sequences [M::worker_pipeline::7686.1511.00] mapped 334912 sequences [M::worker_pipeline::7696.5121.00] mapped 334942 sequences [M::worker_pipeline::7706.3041.00] mapped 334874 sequences [M::worker_pipeline::7716.2051.00] mapped 334880 sequences [M::worker_pipeline::7726.1481.00] mapped 334902 sequences [M::worker_pipeline::7736.0601.00] mapped 334898 sequences [M::worker_pipeline::7746.1921.00] mapped 334920 sequences [M::worker_pipeline::7756.2631.00] mapped 334944 sequences [M::worker_pipeline::7765.9741.00] mapped 334918 sequences [M::worker_pipeline::7775.6521.00] mapped 334932 sequences [M::worker_pipeline::7785.6211.00] mapped 334944 sequences [M::worker_pipeline::7795.2531.00] mapped 334920 sequences [M::worker_pipeline::7805.1731.00] mapped 334942 sequences [M::worker_pipeline::7815.1471.00] mapped 334888 sequences [M::worker_pipeline::7824.4931.00] mapped 334866 sequences [M::worker_pipeline::7834.2661.00] mapped 334880 sequences [M::worker_pipeline::7844.1591.00] mapped 334910 sequences [M::worker_pipeline::7853.7621.00] mapped 334852 sequences [M::worker_pipeline::7863.3131.00] mapped 334896 sequences [M::worker_pipeline::7873.4031.00] mapped 334876 sequences [M::worker_pipeline::7883.0191.00] mapped 334888 sequences [M::worker_pipeline::7892.7351.00] mapped 334902 sequences [M::worker_pipeline::7902.7041.00] mapped 334912 sequences [M::worker_pipeline::7912.6261.00] mapped 334928 sequences [M::worker_pipeline::7922.4031.00] mapped 334908 sequences [M::worker_pipeline::7932.3551.00] mapped 334904 sequences [M::worker_pipeline::7942.0551.00] mapped 334896 sequences [M::worker_pipeline::7951.9411.00] mapped 334872 sequences [M::worker_pipeline::7961.6431.00] mapped 334878 sequences [M::worker_pipeline::7971.3291.00] mapped 334928 sequences [M::worker_pipeline::7981.3731.00] mapped 334896 sequences [M::worker_pipeline::7991.1821.00] mapped 334872 sequences [M::worker_pipeline::8001.0571.00] mapped 334842 sequences [M::worker_pipeline::8010.8711.00] mapped 334882 sequences [M::worker_pipeline::8020.6111.00] mapped 334886 sequences [M::worker_pipeline::8030.6351.00] mapped 334862 sequences [M::worker_pipeline::8040.7421.00] mapped 334884 sequences [M::worker_pipeline::8050.5131.00] mapped 334900 sequences [M::worker_pipeline::8060.3131.00] mapped 334914 sequences [M::worker_pipeline::8069.9851.00] mapped 334904 sequences [M::worker_pipeline::8080.1651.00] mapped 334912 sequences [M::worker_pipeline::8089.7481.00] mapped 334892 sequences [M::worker_pipeline::8099.6641.00] mapped 334882 sequences [M::worker_pipeline::8109.3811.00] mapped 334908 sequences [M::worker_pipeline::8119.4791.00] mapped 334874 sequences [M::worker_pipeline::8129.1391.00] mapped 334908 sequences [M::worker_pipeline::8138.6831.00] mapped 334842 sequences [M::worker_pipeline::8148.4191.00] mapped 334860 sequences [M::worker_pipeline::8158.5061.00] mapped 334860 sequences [M::worker_pipeline::8168.8601.00] mapped 334940 sequences [M::worker_pipeline::8178.8251.00] mapped 334860 sequences [M::worker_pipeline::8188.2651.00] mapped 334862 sequences [M::worker_pipeline::8198.1311.00] mapped 334890 sequences [M::worker_pipeline::8208.3781.00] mapped 334866 sequences [M::worker_pipeline::8218.0471.00] mapped 334860 sequences [M::worker_pipeline::8227.7921.00] mapped 334886 sequences [M::worker_pipeline::8237.6441.00] mapped 334872 sequences [M::worker_pipeline::8247.2381.00] mapped 334910 sequences [M::worker_pipeline::8256.7241.00] mapped 334902 sequences [M::worker_pipeline::8266.8971.00] mapped 334826 sequences [M::worker_pipeline::8276.8611.00] mapped 334958 sequences [M::worker_pipeline::8286.7971.00] mapped 334870 sequences [M::worker_pipeline::8296.4141.00] mapped 334868 sequences [M::worker_pipeline::8306.3351.00] mapped 334886 sequences [M::worker_pipeline::8315.7071.00] mapped 334868 sequences [M::worker_pipeline::8325.4991.00] mapped 334896 sequences [M::worker_pipeline::8335.6451.00] mapped 334874 sequences [M::worker_pipeline::8345.7601.00] mapped 334872 sequences [M::worker_pipeline::8355.7281.00] mapped 334862 sequences [M::worker_pipeline::8365.6141.00] mapped 334924 sequences [M::worker_pipeline::8375.3541.00] mapped 334858 sequences [M::worker_pipeline::8385.9231.00] mapped 334928 sequences [M::worker_pipeline::8396.0641.00] mapped 334862 sequences [M::worker_pipeline::8405.9581.00] mapped 334950 sequences [M::worker_pipeline::8415.9621.00] mapped 334918 sequences [M::worker_pipeline::8426.1761.00] mapped 334822 sequences [M::worker_pipeline::8436.2141.00] mapped 334824 sequences [M::worker_pipeline::8446.0581.00] mapped 334832 sequences [M::worker_pipeline::8455.7981.00] mapped 334898 sequences [M::worker_pipeline::8465.5671.00] mapped 334814 sequences [M::worker_pipeline::8475.6481.00] mapped 334860 sequences [M::worker_pipeline::8485.5091.00] mapped 334894 sequences [M::worker_pipeline::8495.4421.00] mapped 334866 sequences [M::worker_pipeline::8505.4461.00] mapped 334834 sequences [M::worker_pipeline::8515.4401.00] mapped 334880 sequences [M::worker_pipeline::8525.7251.00] mapped 334856 sequences [M::worker_pipeline::8535.2761.00] mapped 334850 sequences [M::worker_pipeline::8546.2041.00] mapped 334928 sequences [M::worker_pipeline::8555.9761.00] mapped 334854 sequences [M::worker_pipeline::8566.4131.00] mapped 334866 sequences [M::worker_pipeline::8576.4861.00] mapped 334888 sequences [M::worker_pipeline::8586.5811.00] mapped 334910 sequences [M::worker_pipeline::8596.4241.00] mapped 334858 sequences [M::worker_pipeline::8606.2481.00] mapped 334838 sequences [M::worker_pipeline::8616.0791.00] mapped 334888 sequences [M::worker_pipeline::8626.1121.00] mapped 334880 sequences [M::worker_pipeline::8636.0031.00] mapped 334910 sequences [M::worker_pipeline::8646.1681.00] mapped 334864 sequences [M::worker_pipeline::8656.0951.00] mapped 334884 sequences [M::worker_pipeline::8665.9471.00] mapped 334894 sequences [M::worker_pipeline::8675.7111.00] mapped 334858 sequences [M::worker_pipeline::8685.3791.00] mapped 334912 sequences [M::worker_pipeline::8695.3141.00] mapped 334880 sequences [M::worker_pipeline::8705.3331.00] mapped 334914 sequences [M::worker_pipeline::8715.2481.00] mapped 334860 sequences [M::worker_pipeline::8725.2791.00] mapped 334876 sequences [M::worker_pipeline::8734.8171.00] mapped 334884 sequences [M::worker_pipeline::8744.6831.00] mapped 334876 sequences [M::worker_pipeline::8754.7561.00] mapped 334864 sequences [M::worker_pipeline::8764.7001.00] mapped 334828 sequences [M::worker_pipeline::8774.6561.00] mapped 334874 sequences [M::worker_pipeline::8784.1921.00] mapped 334880 sequences [M::worker_pipeline::8793.9371.00] mapped 334880 sequences [M::worker_pipeline::8803.8281.00] mapped 334850 sequences [M::worker_pipeline::8813.8101.00] mapped 334846 sequences [M::worker_pipeline::8824.1451.00] mapped 334914 sequences [M::worker_pipeline::8833.8331.00] mapped 334900 sequences [M::worker_pipeline::8843.7461.00] mapped 334872 sequences [M::worker_pipeline::8853.2871.00] mapped 334892 sequences [M::worker_pipeline::8863.1091.00] mapped 334874 sequences [M::worker_pipeline::8872.8731.00] mapped 334902 sequences [M::worker_pipeline::8882.8351.00] mapped 334912 sequences [M::worker_pipeline::8893.0121.00] mapped 334914 sequences [M::worker_pipeline::8903.0761.00] mapped 334896 sequences [M::worker_pipeline::8913.2421.00] mapped 334914 sequences [M::worker_pipeline::8923.0321.00] mapped 334938 sequences [M::worker_pipeline::8933.1911.00] mapped 334872 sequences [M::worker_pipeline::8943.1141.00] mapped 334900 sequences [M::worker_pipeline::8953.0411.00] mapped 334900 sequences [M::worker_pipeline::8963.0401.00] mapped 334834 sequences [M::worker_pipeline::8972.9981.00] mapped 334898 sequences [M::worker_pipeline::8982.4811.00] mapped 334806 sequences [M::worker_pipeline::8992.5691.00] mapped 334880 sequences [M::worker_pipeline::9002.3411.00] mapped 334886 sequences [M::worker_pipeline::9012.3921.00] mapped 334866 sequences [M::worker_pipeline::9022.5231.00] mapped 334850 sequences [M::worker_pipeline::9032.2621.00] mapped 334838 sequences [M::worker_pipeline::9042.1831.00] mapped 334838 sequences [M::worker_pipeline::9052.3721.00] mapped 334910 sequences [M::worker_pipeline::9062.4591.00] mapped 334874 sequences [M::worker_pipeline::9072.4121.00] mapped 334860 sequences [M::worker_pipeline::9082.3111.00] mapped 334892 sequences [M::worker_pipeline::9092.1351.00] mapped 334910 sequences [M::worker_pipeline::9102.0031.00] mapped 334912 sequences [M::worker_pipeline::9111.6981.00] mapped 334876 sequences [M::worker_pipeline::9121.3141.00] mapped 334904 sequences [M::worker_pipeline::9131.4401.00] mapped 334910 sequences [M::worker_pipeline::9141.7241.00] mapped 334894 sequences [M::worker_pipeline::9151.5691.00] mapped 334836 sequences [M::worker_pipeline::9161.1241.00] mapped 334868 sequences [M::worker_pipeline::9170.9791.00] mapped 334852 sequences [M::worker_pipeline::9180.9461.00] mapped 334844 sequences [M::worker_pipeline::9190.8891.00] mapped 334868 sequences [M::worker_pipeline::9200.7741.00] mapped 334852 sequences [M::worker_pipeline::9210.8271.00] mapped 334832 sequences [M::worker_pipeline::9220.2161.00] mapped 334858 sequences [M::worker_pipeline::9230.4711.00] mapped 334912 sequences [M::worker_pipeline::9240.4881.00] mapped 334852 sequences [M::worker_pipeline::9250.4011.00] mapped 334870 sequences [M::worker_pipeline::9259.9101.00] mapped 334912 sequences [M::worker_pipeline::9269.6691.00] mapped 334872 sequences [M::worker_pipeline::9279.2121.00] mapped 334844 sequences [M::worker_pipeline::9288.9431.00] mapped 334856 sequences [M::worker_pipeline::9298.7241.00] mapped 334884 sequences [M::worker_pipeline::9308.9671.00] mapped 334900 sequences [M::worker_pipeline::9318.7161.00] mapped 334890 sequences [M::worker_pipeline::9328.5901.00] mapped 334904 sequences [M::worker_pipeline::9338.1611.00] mapped 334842 sequences [M::worker_pipeline::9347.9931.00] mapped 334854 sequences [M::worker_pipeline::9358.0051.00] mapped 334854 sequences [M::worker_pipeline::9367.7811.00] mapped 334884 sequences [M::worker_pipeline::9378.2901.00] mapped 334844 sequences [M::worker_pipeline::9388.2451.00] mapped 334882 sequences [M::worker_pipeline::9398.0251.00] mapped 334852 sequences [M::worker_pipeline::9407.8211.00] mapped 334858 sequences [M::worker_pipeline::9417.7881.00] mapped 334910 sequences [M::worker_pipeline::9427.8051.00] mapped 334888 sequences [M::worker_pipeline::9437.6231.00] mapped 334850 sequences [M::worker_pipeline::9447.6171.00] mapped 334844 sequences [M::worker_pipeline::9457.5141.00] mapped 334880 sequences [M::worker_pipeline::9467.1521.00] mapped 334880 sequences [M::worker_pipeline::9477.1841.00] mapped 334832 sequences [M::worker_pipeline::9487.1881.00] mapped 334900 sequences [M::worker_pipeline::9497.5131.00] mapped 334772 sequences [M::worker_pipeline::9507.6451.00] mapped 334768 sequences [M::worker_pipeline::9517.5321.00] mapped 334778 sequences [M::worker_pipeline::9527.5961.00] mapped 334772 sequences [M::worker_pipeline::9537.5871.00] mapped 334768 sequences [M::worker_pipeline::9547.6201.00] mapped 334788 sequences [M::worker_pipeline::9557.6271.00] mapped 334742 sequences [M::worker_pipeline::9567.5251.00] mapped 334742 sequences [M::worker_pipeline::9577.2971.00] mapped 334762 sequences [M::worker_pipeline::9587.0421.00] mapped 334818 sequences [M::worker_pipeline::9597.0681.00] mapped 334780 sequences [M::worker_pipeline::9606.9671.00] mapped 334814 sequences [M::worker_pipeline::9617.3911.00] mapped 334774 sequences [M::worker_pipeline::9627.2191.00] mapped 334762 sequences [M::worker_pipeline::9637.2231.00] mapped 334784 sequences [M::worker_pipeline::9646.9071.00] mapped 334766 sequences [M::worker_pipeline::9656.8621.00] mapped 334780 sequences [M::worker_pipeline::9666.5341.00] mapped 334760 sequences [M::worker_pipeline::9676.6651.00] mapped 334774 sequences [M::worker_pipeline::9686.5831.00] mapped 334806 sequences [M::worker_pipeline::9696.5481.00] mapped 334810 sequences [M::worker_pipeline::9706.4531.00] mapped 334776 sequences [M::worker_pipeline::9716.0951.00] mapped 334770 sequences [M::worker_pipeline::9726.0001.00] mapped 334764 sequences [M::worker_pipeline::9736.6041.00] mapped 334768 sequences [M::worker_pipeline::9746.8171.00] mapped 334878 sequences [M::worker_pipeline::9756.4731.00] mapped 334728 sequences [M::worker_pipeline::9765.9041.00] mapped 334808 sequences [M::worker_pipeline::9775.6211.00] mapped 334768 sequences [M::worker_pipeline::9785.8301.00] mapped 334760 sequences [M::worker_pipeline::9796.8291.00] mapped 334852 sequences [M::worker_pipeline::9806.6941.00] mapped 334754 sequences [M::worker_pipeline::9816.7101.00] mapped 334774 sequences [M::worker_pipeline::9826.9331.00] mapped 334772 sequences [M::worker_pipeline::9836.6791.00] mapped 334808 sequences [M::worker_pipeline::9846.5901.00] mapped 334792 sequences [M::worker_pipeline::9856.5521.00] mapped 334762 sequences [M::worker_pipeline::9866.7421.00] mapped 334794 sequences [M::worker_pipeline::9876.5541.00] mapped 334776 sequences [M::worker_pipeline::9886.0821.00] mapped 334756 sequences [M::worker_pipeline::9895.7391.00] mapped 334764 sequences [M::worker_pipeline::9905.7931.00] mapped 334732 sequences [M::worker_pipeline::9915.2711.00] mapped 334780 sequences [M::worker_pipeline::9925.0421.00] mapped 334770 sequences [M::worker_pipeline::9934.8591.00] mapped 334766 sequences [M::worker_pipeline::9944.3041.00] mapped 334766 sequences [M::worker_pipeline::9953.6381.00] mapped 334764 sequences [M::worker_pipeline::9963.3161.00] mapped 334760 sequences [M::worker_pipeline::9973.0251.00] mapped 334740 sequences [M::worker_pipeline::9982.7021.00] mapped 334784 sequences [M::worker_pipeline::9992.6201.00] mapped 334784 sequences [M::worker_pipeline::10002.0721.00] mapped 334806 sequences [M::worker_pipeline::10011.5291.00] mapped 334752 sequences [M::worker_pipeline::10021.3141.00] mapped 334830 sequences [M::worker_pipeline::10031.2751.00] mapped 334784 sequences [M::worker_pipeline::10041.3571.00] mapped 334810 sequences [M::worker_pipeline::10051.2521.00] mapped 334760 sequences [M::worker_pipeline::10061.0271.00] mapped 334776 sequences [M::worker_pipeline::10070.5401.00] mapped 334776 sequences [M::worker_pipeline::10080.5441.00] mapped 334788 sequences [M::worker_pipeline::10090.5041.00] mapped 334784 sequences [M::worker_pipeline::10100.4751.00] mapped 334742 sequences [M::worker_pipeline::10110.2741.00] mapped 334716 sequences [M::worker_pipeline::10120.2671.00] mapped 334762 sequences [M::worker_pipeline::10130.3391.00] mapped 334760 sequences [M::worker_pipeline::10140.7021.00] mapped 334788 sequences [M::worker_pipeline::10150.7471.00] mapped 334826 sequences [M::worker_pipeline::10160.8981.00] mapped 334840 sequences [M::worker_pipeline::10170.6941.00] mapped 334770 sequences [M::worker_pipeline::10180.8131.00] mapped 334784 sequences [M::worker_pipeline::10190.6101.00] mapped 334776 sequences [M::worker_pipeline::10200.5551.00] mapped 334800 sequences [M::worker_pipeline::10210.3061.00] mapped 334752 sequences [M::worker_pipeline::10220.2921.00] mapped 334764 sequences [M::worker_pipeline::10230.4451.00] mapped 334758 sequences [M::worker_pipeline::10240.5161.00] mapped 334772 sequences [M::worker_pipeline::10250.1741.00] mapped 334814 sequences [M::worker_pipeline::10260.2451.00] mapped 334788 sequences [M::worker_pipeline::10270.3041.00] mapped 334756 sequences [M::worker_pipeline::10280.3511.00] mapped 334758 sequences [M::worker_pipeline::10290.3681.00] mapped 334814 sequences [M::worker_pipeline::10300.5681.00] mapped 334766 sequences [M::worker_pipeline::10310.5101.00] mapped 334798 sequences [M::worker_pipeline::10320.2881.00] mapped 334754 sequences [M::worker_pipeline::10330.2001.00] mapped 334748 sequences [M::worker_pipeline::10340.0801.00] mapped 334760 sequences [M::worker_pipeline::10350.2351.00] mapped 334776 sequences [M::worker_pipeline::10360.1441.00] mapped 334750 sequences [M::worker_pipeline::10369.9541.00] mapped 334788 sequences [M::worker_pipeline::10380.4151.00] mapped 334792 sequences [M::worker_pipeline::10390.1531.00] mapped 334772 sequences [M::worker_pipeline::10400.4731.00] mapped 334750 sequences [M::worker_pipeline::10410.8721.00] mapped 334830 sequences [M::worker_pipeline::10420.7331.00] mapped 334752 sequences [M::worker_pipeline::10430.1551.00] mapped 334754 sequences [M::worker_pipeline::10439.9491.00] mapped 334738 sequences [M::worker_pipeline::10450.4261.00] mapped 335370 sequences [M::worker_pipeline::10461.1841.00] mapped 335506 sequences [M::worker_pipeline::10471.4751.00] mapped 335494 sequences [M::worker_pipeline::10481.9521.00] mapped 335490 sequences [M::worker_pipeline::10492.3541.00] mapped 335572 sequences [M::worker_pipeline::10502.7471.00] mapped 335562 sequences [M::worker_pipeline::10513.0691.00] mapped 335506 sequences [M::worker_pipeline::10523.4461.00] mapped 335572 sequences [M::worker_pipeline::10533.6081.00] mapped 335566 sequences [M::worker_pipeline::10544.1311.00] mapped 335486 sequences [M::worker_pipeline::10554.3091.00] mapped 335566 sequences [M::worker_pipeline::10564.7601.00] mapped 335462 sequences [M::worker_pipeline::10575.3081.00] mapped 335518 sequences [M::worker_pipeline::10585.5261.00] mapped 335540 sequences [M::worker_pipeline::10595.9101.00] mapped 335550 sequences [M::worker_pipeline::10606.2751.00] mapped 335540 sequences [M::worker_pipeline::10616.1431.00] mapped 335492 sequences [M::worker_pipeline::10626.0431.00] mapped 335486 sequences [M::worker_pipeline::10636.1131.00] mapped 335532 sequences [M::worker_pipeline::10646.7571.00] mapped 335502 sequences [M::worker_pipeline::10657.4591.00] mapped 335556 sequences [M::worker_pipeline::10668.3871.00] mapped 335538 sequences [M::worker_pipeline::10678.7461.00] mapped 335580 sequences [M::worker_pipeline::10689.7451.00] mapped 335502 sequences [M::worker_pipeline::10700.2761.00] mapped 335640 sequences [M::worker_pipeline::10710.6761.00] mapped 335610 sequences [M::worker_pipeline::10721.4151.00] mapped 335534 sequences [M::worker_pipeline::10731.3431.00] mapped 335522 sequences [M::worker_pipeline::10741.3501.00] mapped 335528 sequences [M::worker_pipeline::10752.0751.00] mapped 335534 sequences [M::worker_pipeline::10762.3391.00] mapped 335584 sequences [M::worker_pipeline::10772.5411.00] mapped 335552 sequences [M::worker_pipeline::10782.5791.00] mapped 335430 sequences [M::worker_pipeline::10793.0381.00] mapped 335480 sequences [M::worker_pipeline::10802.9851.00] mapped 335562 sequences [M::worker_pipeline::10813.0521.00] mapped 335586 sequences [M::worker_pipeline::10823.8741.00] mapped 335564 sequences [M::worker_pipeline::10834.3361.00] mapped 335562 sequences [M::worker_pipeline::10844.8261.00] mapped 335522 sequences [M::worker_pipeline::10855.2261.00] mapped 335524 sequences [M::worker_pipeline::10865.1971.00] mapped 335544 sequences [M::worker_pipeline::10875.4071.00] mapped 335518 sequences [M::worker_pipeline::10885.5671.00] mapped 335486 sequences [M::worker_pipeline::10895.9661.00] mapped 335582 sequences [M::worker_pipeline::10906.5111.00] mapped 335566 sequences [M::worker_pipeline::10916.0671.00] mapped 335526 sequences [M::worker_pipeline::10926.4511.00] mapped 335484 sequences [M::worker_pipeline::10936.5081.00] mapped 335570 sequences [M::worker_pipeline::10947.0991.00] mapped 335568 sequences [M::worker_pipeline::10957.6731.00] mapped 335558 sequences [M::worker_pipeline::10967.6761.00] mapped 335546 sequences [M::worker_pipeline::10977.8611.00] mapped 335556 sequences [M::worker_pipeline::10988.0161.00] mapped 335470 sequences [M::worker_pipeline::10998.6221.00] mapped 335500 sequences [M::worker_pipeline::11008.5021.00] mapped 335484 sequences [M::worker_pipeline::11018.4851.00] mapped 335518 sequences [M::worker_pipeline::11028.5261.00] mapped 335480 sequences [M::worker_pipeline::11037.9441.00] mapped 335486 sequences [M::worker_pipeline::11048.1851.00] mapped 335524 sequences [M::worker_pipeline::11058.2551.00] mapped 335524 sequences [M::worker_pipeline::11068.1341.00] mapped 335510 sequences [M::worker_pipeline::11078.4311.00] mapped 335460 sequences [M::worker_pipeline::11088.5431.00] mapped 335464 sequences [M::worker_pipeline::11098.5201.00] mapped 335594 sequences [M::worker_pipeline::11108.3341.00] mapped 335530 sequences [M::worker_pipeline::11119.0151.00] mapped 335592 sequences [M::worker_pipeline::11129.3081.00] mapped 335598 sequences [M::worker_pipeline::11139.7881.00] mapped 335562 sequences [M::worker_pipeline::11150.0771.00] mapped 335460 sequences [M::worker_pipeline::11160.2981.00] mapped 335512 sequences [M::worker_pipeline::11170.5611.00] mapped 335602 sequences [M::worker_pipeline::11180.4701.00] mapped 335500 sequences [M::worker_pipeline::11190.7691.00] mapped 335476 sequences [M::worker_pipeline::11201.0591.00] mapped 335522 sequences [M::worker_pipeline::11211.4161.00] mapped 335476 sequences [M::worker_pipeline::11221.9461.00] mapped 335520 sequences [M::worker_pipeline::11232.2171.00] mapped 335500 sequences [M::worker_pipeline::11242.4821.00] mapped 335466 sequences [M::worker_pipeline::11252.9281.00] mapped 335488 sequences [M::worker_pipeline::11263.6091.00] mapped 335568 sequences [M::worker_pipeline::11273.8121.00] mapped 335500 sequences [M::worker_pipeline::11283.2961.00] mapped 335482 sequences [M::worker_pipeline::11293.1841.00] mapped 335566 sequences [M::worker_pipeline::11303.7221.00] mapped 335582 sequences [M::worker_pipeline::11314.0461.00] mapped 335540 sequences [M::worker_pipeline::11324.0841.00] mapped 335448 sequences [M::worker_pipeline::11334.0731.00] mapped 335538 sequences [M::worker_pipeline::11344.1831.00] mapped 335508 sequences [M::worker_pipeline::11354.4411.00] mapped 335500 sequences [M::worker_pipeline::11364.4311.00] mapped 335514 sequences [M::worker_pipeline::11374.8231.00] mapped 335464 sequences [M::worker_pipeline::11384.9611.00] mapped 335542 sequences [M::worker_pipeline::11395.1231.00] mapped 335536 sequences [M::worker_pipeline::11405.1841.00] mapped 335540 sequences [M::worker_pipeline::11415.3021.00] mapped 335494 sequences [M::worker_pipeline::11425.3221.00] mapped 335454 sequences [M::worker_pipeline::11435.7491.00] mapped 335532 sequences [M::worker_pipeline::11446.1521.00] mapped 335534 sequences [M::worker_pipeline::11456.0451.00] mapped 335564 sequences [M::worker_pipeline::11466.1501.00] mapped 335604 sequences [M::worker_pipeline::11476.0771.00] mapped 335526 sequences [M::worker_pipeline::11486.1621.00] mapped 335522 sequences [M::worker_pipeline::11495.7971.00] mapped 335494 sequences [M::worker_pipeline::11506.0701.00] mapped 335466 sequences [M::worker_pipeline::11516.1991.00] mapped 335452 sequences [M::worker_pipeline::11525.9001.00] mapped 335486 sequences [M::worker_pipeline::11535.4011.00] mapped 335462 sequences [M::worker_pipeline::11545.6841.00] mapped 335482 sequences [M::worker_pipeline::11555.8261.00] mapped 335502 sequences [M::worker_pipeline::11565.7031.00] mapped 335492 sequences [M::worker_pipeline::11575.8991.00] mapped 335526 sequences [M::worker_pipeline::11585.4561.00] mapped 335490 sequences [M::worker_pipeline::11595.4001.00] mapped 335514 sequences [M::worker_pipeline::11605.6271.00] mapped 335522 sequences [M::worker_pipeline::11615.8711.00] mapped 335450 sequences [M::worker_pipeline::11625.838*1.00] mapped 335488 sequences [M::worker_pipeline::11 [2021-06-22T03:34:35Z ERROR coverm::bam_generator] The STDERR for the samtools sort part was: [2021-06-22T03:34:35Z ERROR coverm::bam_generator] The STDERR for the remove_minimap2_duplicated_headers part was: [2021-06-22T03:34:35Z ERROR coverm::bam_generator] Cannot continue since mapping failed.

wwood / CoverM

Failed to correctly find or parse BAM file #74