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wwood / CoverM

Read coverage calculator for metagenomics
GNU General Public License v3.0
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blast like output for plotting-coverm filter #76

Open jianshu93 opened 3 years ago

jianshu93 commented 3 years ago

Dear Ben,

I am wondering whether there could be a tabular format output like the PAF format after or before filtering bam files, which can be used for plotting. I have been trying pysam but the speed for parsing is not good.

Thanks,

Jianshu