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wwood / dirseq

Work out whether RNAseq reads in general agree with the direction of the gene predicted
MIT License
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Running dirseq #5

Closed dominikmerges closed 3 years ago

dominikmerges commented 3 years ago

Dear Ben,

I would like to give dirseq a try. However, I am unsure how to actually start the script. So far, I downloaded the folder and tried in bash command line: ruby dirseq It would great if you could give me a hint.

Many thanks and all the best, Dominik

wwood commented 3 years ago

Hi,

I'm not sure you've installed it correctly either. I've updated the README with clearer install and added an example running invocation.

HTH, let me know otherwise. Thanks, ben

dominikmerges commented 3 years ago

Hi Ben, many thanks! It works like a charm. Only think I had to do is to update to another version of ruby, since gem is brocken in the standard conda ruby version. This one works for me: conda install -c conda-forge ruby=2.4.5=h48a8d5d_1003 source: https://github.com/ContinuumIO/anaconda-issues/issues/9863#issuecomment-524183296

All the best, Dominik

wwood commented 3 years ago

Excellent, thank you - that link of yours helped me too.