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wwood / dirseq

Work out whether RNAseq reads in general agree with the direction of the gene predicted
MIT License
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error while loading shared libraries--dirseq install #6

Open uqmwu opened 2 years ago

uqmwu commented 2 years ago

Hi Ben,

I was trying to install dirseq but got the following error, Here is the command: gem install dirseq Error: /anaconda3/envs/dirseq/bin/ruby: error while loading shared libraries: libjemalloc.so.1: cannot open shared object file: No such file or directory I forgot something while installing?

wwood commented 2 years ago

Hi,

THis looks like an issue with your Ruby installation. I'd recommend not using conda for installing it - I've found it has problems like the one above.

uqmwu commented 2 years ago

Hi Ben,

Thanks for your reply. If not install via conda, what installation methods you would recommend? I did not find other installation methods on the website. Thanks.

wwood commented 2 years ago

See the ruby programming language website for options.

Ben WoodcroftMicrobial informatics group leader, ARC Future Fellow (+617) 3443 7334 Centre for Microbiome Research, Level 3, Translational Research Institute, School of Biomedical Sciences, Faculty of Health, Queensland University of Technology

On Jun 17 2022, at 5:06 pm, uqmwu @.***> wrote:

Hi Ben, Thanks for your reply. If not install via conda, what installation methods you would recommend? I did not find other installation methods on the website. Thanks. — Reply to this email directly, view it on GitHub (https://github.com/wwood/dirseq/issues/6#issuecomment-1158562502), or unsubscribe (https://github.com/notifications/unsubscribe-auth/AAADX5GFHN5F2ZIEH65CFRTVPQPWFANCNFSM5YZXFU7Q). You are receiving this because you commented.

uqmwu commented 2 years ago

Thanks Ben,

I have ruby installed at the directory of ~usr/bin, but how can I use this ruby for dirseq installation? After using conda activate dirseq, it will always use the ruby in the ~/anaconda3/envs/dirseq/bin, which always cause error.

wwood commented 2 years ago

Hi,

You could try removing ruby from the condo environment. If you are still having issues along these same lines, it'd probably be easier to talk to a local system administrator because these are issues a bit beyond dirseq.

Happy to answer questions about the dirseq program itself.

Thanks.

-------------- Ben Woodcroft Group leader, Centre for Microbiome Research, QUT

From: uqmwu @.> Sent: Thursday, June 23, 2022 5:33:37 PM To: wwood/dirseq @.> Cc: Ben J Woodcroft @.>; Comment @.> Subject: Re: [wwood/dirseq] error while loading shared libraries--dirseq install (Issue #6)

Thanks Ben,

I have ruby installed at the directory of ~usr/bin, but how can I use this ruby for dirseq installation? After using conda activate dirseq, it will always use the ruby in the ~/anaconda3/envs/dirseq/bin, which always cause error.

― Reply to this email directly, view it on GitHubhttps://github.com/wwood/dirseq/issues/6#issuecomment-1164057855, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AAADX5D5VHQYRDWNXP4GZHTVQQHNDANCNFSM5YZXFU7Q. You are receiving this because you commented.Message ID: @.***>