wwood / finishm

genome improvement and finishing without further sequencing effort
MIT License
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Missing sequences in output file #29

Open donovan-h-parks opened 9 years ago

donovan-h-parks commented 9 years ago

FinishM does an initial check to verify that probes can be constructed for each input sequences. If a probe can be constructed it is reported:

WARN finishm 10/04 14:08:50: Removed 2 scaffolds entirely as they were too short (or made up of all short contigs)

However, these sequences should still end up in the final scaffolds file. Currently, they do not.