wwood
commented
2 years ago Thanks for the kind words. Yes just do that and specify sra
Looks like the documentation could do with an update. Will do.
Ben
-------------- Ben Woodcroft Group leader, Centre for Microbiome Research, QUT
From: LY @.> Sent: Thursday, May 5, 2022 8:06:34 PM To: wwood/kingfisher-download @.> Cc: Subscribed @.***> Subject: [wwood/kingfisher-download] Get .sra files without convertion (Issue #18)
Hi, Kingfisher is a wonderful tool for download and it really helps me alot. I have a question when using this tool : what should I do if I just want .sra files but not fastq ? I find that Kingfisher will convert .sra files into fastq automatically when I use the following code
kingfisher get -r SRR7692286 -m aws-http prefetch -t 16
In your tutorial，it mentions that 'the default parameter of --output-format-possibilities is fastq, shall I change it to other format?
Thank you inadvance !
― Reply to this email directly, view it on GitHubhttps://github.com/wwood/kingfisher-download/issues/18, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AAADX5GCNDHOLCEHGLWG4RDVIOMSVANCNFSM5VER33XQ. You are receiving this because you are subscribed to this thread.Message ID: @.***>
Hi, Kingfisher is a wonderful tool for download and it really helps me alot. I have a question when using this tool : what should I do if I just want .sra files but not fastq ? I find that Kingfisher will convert .sra files into fastq automatically when I use the following code
In your tutorial，it mentions that 'the default parameter of --output-format-possibilities is fastq, shall I change it to other format?
Thank you inadvance !