wwpdb-dictionaries / mmcif_pdbx

wwPDB PDBx/mmCIF Dictionary
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_struct_ref_seq category has .pdbx_strand_id but no .asym_id #56

Open drlemmus opened 1 year ago

drlemmus commented 1 year ago

The pdbx items of _struct_ref_seq use .pdbx_strand_id to reference specific macromolecular chains that are alignedto a reference sequence, but there is no .asym_id equivalent. This forces us to use 'PDB numbering' which seems to be a step back from the mmCIF idea. 1) Can the item _struct_ref_seq.asym_id be added? 2) Should the item _struct_ref_seq.pdbx_strand_id perhaps be deprecated?