Update networkx requirement from <=2.5 to <3.1

Updates the requirements on networkx to permit the latest version.

Release notes

NetworkX 3.0

What's Changed

Tests added in test_centrality.py by @Mjh9122 in networkx/networkx#6200

add laplacian_spectrum example by @paulitapb in networkx/networkx#6169

PR for issue #6033 Improve test coverage for algorithms in betweenness_subset.py #6033 by @ladykkk in networkx/networkx#6083

Di graph edges doc fix by @nsengiyumva-wilberforce in networkx/networkx#6108

Improve coverage for core.py by @Mjh9122 in networkx/networkx#6116

Add clear edges method as a method to be frozen by nx.freeze by @AdamWRichardson in networkx/networkx#6190

Adds LCA test case for self-ancestors from gh-4458. by @rossbar in networkx/networkx#6218

Minor Python 2 cleanup by @rossbar in networkx/networkx#6219

Add example laplacian matrix by @paulitapb in networkx/networkx#6168

Revert 6219 and delete comment. by @rossbar in networkx/networkx#6222

fix wording in error message by @ikethefifth in networkx/networkx#6228

Rm incorrect test case for connected edge swap by @rossbar in networkx/networkx#6223

add missing seed to function called by connected_double_edge_swap by @dschult in networkx/networkx#6231

Hide edges with a weight of None in A*. by @brianhou in networkx/networkx#5945

Add dfs_labeled_edges reporting of reverse edges due to depth_limit. by @dschult in networkx/networkx#6240

Warn users about duplicate nodes in generator function input by @dschult in networkx/networkx#6237

Reenable geospatial examples by @jarrodmillman in networkx/networkx#6252

Draft 3.0 release notes by @MridulS in networkx/networkx#6232

Add 2.8.x release notes by @jarrodmillman in networkx/networkx#6255

doc: clarify allowed alpha when using nx.draw_networkx_edges by @SultanOrazbayev in networkx/networkx#6254

Add a contributor by @SultanOrazbayev in networkx/networkx#6256

Allow MultiDiGraphs for LCA by @dschult in networkx/networkx#6234

Update simple_paths.py to improve readability of the BFS. by @SultanOrazbayev in networkx/networkx#6273

doc: update documentation when providing an iterator over current graph to add/remove_edges_from. by @SultanOrazbayev in networkx/networkx#6268

Fix bug vf2pp is isomorphic issue 6257 by @reneechebbo in networkx/networkx#6270

Improve test coverage for Eigenvector centrality by @Qudirah in networkx/networkx#6227

Bug fix in swap: directed_edge_swap and double_edge_swap by @paulitapb in networkx/networkx#6149

Adding a test to verify that a NetworkXError is raised when calling n… by @reneechebbo in networkx/networkx#6265

Pin to sphinx 5.2.3 by @jarrodmillman in networkx/networkx#6277

Update pre-commit hooks by @jarrodmillman in networkx/networkx#6278

Update GH actions by @jarrodmillman in networkx/networkx#6280

Fix links in release notes by @jarrodmillman in networkx/networkx#6281

bug fix in smallworld.py: random_reference and lattice_reference by @paulitapb in networkx/networkx#6151

[DOC] Follow numpydoc standard in barbell_graph documentation by @SultanOrazbayev in networkx/networkx#6286

Update simple_paths.py: consistent behaviour for is_simple_path when path contains nodes not in the graph. by @SultanOrazbayev in networkx/networkx#6272

Correctly point towards 2.8.8 in release notes by @MridulS in networkx/networkx#6298

Isomorphism improve documentation by @paulitapb in networkx/networkx#6295

Improvements and test coverage for line.py by @Aufinal in networkx/networkx#6215

Fix typo in Katz.py by @faze-geek in networkx/networkx#6310

Broken link in isomorphism documentation by @paulitapb in networkx/networkx#6296

Update copyright years to 2023 by @MridulS in networkx/networkx#6322

fix warnings for make doctest by @dschult in networkx/networkx#6323

fix whitespace issue in test_internet_as_graphs by @danieleades in networkx/networkx#6324

Create a Tikz latex drawing feature for networkx by @dschult in networkx/networkx#6238

Fix docstrings by @jarrodmillman in networkx/networkx#6329

Fix documentation deployment by @jarrodmillman in networkx/networkx#6330

Fix links to migration guide by @jarrodmillman in networkx/networkx#6331

Fix typo in readme file by @tinaoberoi in networkx/networkx#6312

... (truncated)

Commits

5899481 Designate 3.0 release
2522f1d Update release notes (#6341)
8334e96 Refactor vf2pp modules and test files (#6334)
83948b6 Fix typos in the networkx codebase (#6335)
851aab2 Fix typo in readme file (#6312)
f4ae917 Fix links to migration guide (#6331)
1efafc5 Fix documentation deployment (#6330)
a7d50d2 Fix docstrings (#6329)
59ed0cf Create a Tikz latex drawing feature for networkx (#6238)
814b295 fix whitespace issue in 'networkx.generators.tests.test_internet_as_g… (#6324)
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wwu-mmll / photonai_graph

Update networkx requirement from <=2.5 to <3.1 #108

NetworkX 3.0

What's Changed