how to analysis CNCI.py output?

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Coding-Non-Coding Index (CNCI)

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how to analysis CNCI.py output? #2

Open zpspring opened 8 years ago

zpspring commented 8 years ago

Hi: I have correctly installed CNCI on my PC and get an output from CNCI.py, but I don't know how to analysis. The title is: Transcript ID index score start end length. What the "start" and "end" mean? They refer to MLCDS?

 Thanks for any assistance.

ruthbpaula commented 5 years ago

The sequence is considered noncoding if it has an index <0. I believe start and end mean where the analysis began and where it finished in your sequence; probably it refers to potential ORFs.