After perfroming CNIT.py and compare.py successfully. I got the the output viz, CNIT.index (from CNCI.py) and potentially_novel.gtf (from compare.py). Now I undertook step to find the novel lncRNAs from these available files using "filter_novel_lncRNA.py" script. But after running the script in the specified format:
./filter_novel_lncRNA.py -i ../CNIT_lncRNAs/CNIT.index -g comparepy_out/potentially_novel.gtf -o filtered_output/
I get following error:
Run start:
Error: input row '1' can not be fetched
I tried to look into the CNIT.index file. but file looks okay to me.
After perfroming CNIT.py and compare.py successfully. I got the the output viz, CNIT.index (from CNCI.py) and potentially_novel.gtf (from compare.py). Now I undertook step to find the novel lncRNAs from these available files using "filter_novel_lncRNA.py" script. But after running the script in the specified format:
./filter_novel_lncRNA.py -i ../CNIT_lncRNAs/CNIT.index -g comparepy_out/potentially_novel.gtf -o filtered_output/ I get following error:
Run start: Error: input row '1' can not be fetched I tried to look into the CNIT.index file. but file looks okay to me.
CNIT.index view:
potentially_novel.gtf view:
Please help with this!