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wwylab / DeMixT

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Missing function in preproccesing #21

Closed AdamLaang closed 1 year ago

AdamLaang commented 2 years ago

Hi!

I'm following the tutorial and noticed that a function is not included. newSeqCountSet (line 139) in the source of DeMixT_preprocessing.R is nowhere to be found and therefore causing the error:

Error in newSeqCountSet(as.matrix(newt), designs) : could not find function "newSeqCountSet"

Best regards, Adam

jiyunmaths commented 2 years ago

@AdamLaang Thanks for your question. The function "newSeqCountSet" is from the library "DSS". As mentioned in the tutorial, please load the following libraries as the first step of running DeMixT:

library(DeMixT)
library(dplyr)
library(dendextend)
library(psych)
library(DSS)
library(ClassDiscovery)

Please let me know if you have any questions.

jiyunmaths commented 1 year ago

This issue was addressed.