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wwylab / MuSE

Somatic point mutation caller
GNU General Public License v2.0
22 stars 8 forks source link

MuSE docker dependency packages #4

Closed maotian06 closed 1 year ago

maotian06 commented 2 years ago

This is not a bug, but when I tried to use the provided 'Dockerfile' to build the docker image in our GitHub container registry, we found a few dependencies related to MuSE V2.0.

Because our linter checks for Dockerfile need to use --no-install-recommends option for apt-get update && apt-get install. So we added other dependency packages, here is the command we used in that section:

RUN apt-get update && apt-get install -y --no-install-recommends \
    git g++ cmake autoconf libtool liblzma-dev zlib1g-dev libbz2-dev libcurl3-dev libssl-dev \
    ca-certificates cpp make libltdl-dev wget unzip \
    && apt-get clean && rm -rf /var/lib/apt/lists/*

This might help reduce the docker image size~ Hope it helps!!!

jiyunmaths commented 2 years ago

@maotian06 Thanks Mao. It's a good idea. Thanks for your suggestion. I am happy to include it in our next update.