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wyang17 / SQuIRE

Software for Quantifying Interspersed Repeat Expression
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UnboundLocalError: local variable 'paired' referenced before assignment #31

Open alerubio opened 5 years ago

alerubio commented 5 years ago

I am getting this error in only 8 of 86 samples:

Traceback (most recent call last): File "/home/alejandro.rubio/tools/miniconda3/envs/squire/bin/squire", line 11, in srun: error: mulhacen9: task 0: Exited with exit code 1 load_entry_point('SQuIRE', 'console_scripts', 'squire')() File "/home/alejandro.rubio/tools/SQuIRE/squire/cli.py", line 156, in main subargs.func(args = subargs) File "/home/alejandro.rubio/tools/SQuIRE/squire/Count.py", line 1560, in main paired_end = is_paired(bamfile,basename,tempfolder,debug) File "/home/alejandro.rubio/tools/SQuIRE/squire/Count.py", line 325, in is_paired return paired UnboundLocalError: local variable 'paired' referenced before assignment

Any idea?

MaxwellShih commented 4 years ago

Similar here! I have fixed the potential 'join' issue and successfully run for most of my samples for the 'squire Count' step. Afterward I switched to analyze different dataset, I ran into the trouble that squire Count crashed again. Now my error message is

Traceback (most recent call last): File "/home/maxwells/bin/miniconda3/envs/squire/bin/squire", line 11, in load_entry_point('SQuIRE', 'console_scripts', 'squire')() File "/home/maxwells/bin/SQuIRE/squire/cli.py", line 156, in main

Help needed again, please~

marieBvr commented 2 years ago

Hi, Activating this issue again, I have the same error UnboundLocalError: local variable prev_TE_ID referenced before assignment. Have you found a solution?

Thx