wyang17 / SQuIRE

Software for Quantifying Interspersed Repeat Expression
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duplications of gene_id in the gtf file inside the squire_fetch directory #38

Open MaxwellShih opened 4 years ago

MaxwellShih commented 4 years ago

Hello, I am using SQuIRE for the TE expression analysis in Drosophila (dm6). I find that there are at least three duplications: CG40439, CG46302, and CG17715. Coincidentally (?), they were duplicated in chr2L and chr2R. Here are the links for their documented info on FlyBase: CG40439 http://flybase.org/reports/FBgn0058439 CG46302 http://flybase.org/reports/FBgn0284080 CG17715 http://flybase.org/reports/FBgn0041004 Any idea?