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wyang17 / SQuIRE

Software for Quantifying Interspersed Repeat Expression
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Error in writing count outputs #7

Closed cpacyna closed 6 years ago

cpacyna commented 6 years ago

Finished running expectation-maximization calculation after iteration:38 2018-06-22 16:50:47.094679

Writing counts 2018-06-22 16:50:47.094714

Traceback (most recent call last): File "/users/cpacyna/miniconda3/envs/squire_git/bin/squire", line 11, in load_entry_point('SQuIRE', 'console_scripts', 'squire')() File "/users/cpacyna/SQuIRE/squire/cli.py", line 156, in main subargs.func(args = subargs) File "/users/cpacyna/SQuIRE/squire/Count.py", line 2171, in main RepClass.writeRep(aligned_libsize,counts_temp,basename,strandedness,iteration) File "/users/cpacyna/SQuIRE/squire/Count.py", line 1205, in writeRep self.fpkm += outline.fpkm UnboundLocalError: local variable 'outline' referenced before assignment