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wyang17 / SQuIRE

Software for Quantifying Interspersed Repeat Expression
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error with " TypeError: sequence item 2: expected string, bool found" #76

Open JianGuoZhou3 opened 2 years ago

JianGuoZhou3 commented 2 years ago

Dear @wyang17 I run the first two steps, map, and count, but draw I have the error.

(squire) [zhou@localhost squire]$     squire Draw --map_folder ${dir}/squire --draw_folder ${dir}/squire --name ${i} --build ${ref} --pthreads 30
May 08 13:34:27 ..... reading from BAM, output wiggle
May 08 13:37:10 ..... done
Traceback (most recent call last):
  File "/home/zhou/miniconda2/envs/squire/bin/squire", line 11, in <module>
    load_entry_point('SQuIRE', 'console_scripts', 'squire')()
  File "/home/zhou/SQuIRE/squire/cli.py", line 156, in main
    subargs.func(args = subargs)
  File "/home/zhou/SQuIRE/squire/Draw.py", line 188, in main
    make_bigwig(chrominfo,bedgraph_list)
  File "/home/zhou/SQuIRE/squire/Draw.py", line 131, in make_bigwig
    igvcommand=" ".join(igvcommand_list)
TypeError: sequence item 2: expected string, bool found
nkurtys commented 1 year ago

I have the same issue and I cannot figure out how to fix it.