Open ivfengel opened 1 year ago
Got the same issue, hope someone can help, thanks!
Hi, I think the problem comes with R3.4.1 and the way I solve this is by creating a conda environment and install R3.4.1 first before installing squire. Here's the code I used: mamba create -n squire mamba activate squire mamba install r-base=3.4.1 mamba install -c bioconda squire
Hello!
I need to install SQuiRE in conda. I follow the instructions as it comes in github: https://github.com/wyang17/SQuIRE. However, the terminal returns the following:
bioconda/linux-64 Using cache bioconda/noarch Using cache conda-forge/linux-64 Using cache conda-forge/noarch Using cache pkgs/main/linux-64 Using cache pkgs/main/noarch Using cache pkgs/r/linux-64 Using cache pkgs/r/noarch Using cache
Encountered problems while solving:
I tried removing the version of icu it installs (icu 58.2) and installing icu 54, but once again it can't find it. I also tried installing all dependencies by hand and then installing SQuiRE. However, it complains about some dependencies.... that I already have installed!!!!!
bioconda/linux-64 Using cache bioconda/noarch Using cache conda-forge/linux-64 Using cache conda-forge/noarch Using cache pkgs/main/linux-64 Using cache pkgs/main/noarch Using cache pkgs/r/linux-64 Using cache pkgs/r/noarch Using cache
Anchored packages:
Problems encountered when resolving:
But actually, the libzlib library >=1.2.13,<1.3.0a0 is already installed:
(squire) landeiralab@landeiralab-ws:~$ conda list Packages in environment at /home/landeiralab/miniconda3/envs/squire:
Name Version Build Channel libzlib 1.2.13 h166bdaf_4 conda-forge
I hope someone can help me.
Thanks!