I was wondering if there is a way to use SQuIRE Fetch to obtain the reference data from the T2T human genome annotation as, so far I have only be able to obtain the FASTA file (hs1.fa.gz). Is there a way to obtain the other files such as .gtf, STAR, chrom.info, RepeatMasker, etc; the same way as it is possible for hg38?
Hello!
I was wondering if there is a way to use SQuIRE Fetch to obtain the reference data from the T2T human genome annotation as, so far I have only be able to obtain the FASTA file (hs1.fa.gz). Is there a way to obtain the other files such as .gtf, STAR, chrom.info, RepeatMasker, etc; the same way as it is possible for hg38?
Thank you very much in advance, Javier.