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wyang17 / SQuIRE

Software for Quantifying Interspersed Repeat Expression
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T2T Reference Genome #94

Open JaviKizami opened 1 year ago

JaviKizami commented 1 year ago

Hello!

I was wondering if there is a way to use SQuIRE Fetch to obtain the reference data from the T2T human genome annotation as, so far I have only be able to obtain the FASTA file (hs1.fa.gz). Is there a way to obtain the other files such as .gtf, STAR, chrom.info, RepeatMasker, etc; the same way as it is possible for hg38?

Thank you very much in advance, Javier.

singhbhavya commented 9 months ago

I have the same question! Javier, were you able to resolve this?