Is it possible to use SQuIRE with a non-model organism by providing the genome assembly in FASTA format and the Repeatmasker output files (.tab, .tsv) instead of running fetch? And which files and Repeatmasker output formats need to be present in the analysis folder for that?
pilargmarch
commented
4 months ago
Is it possible to use SQuIRE with a non-model organism by providing the genome assembly in FASTA format and the Repeatmasker output files (.tab, .tsv) instead of running fetch? And which files and Repeatmasker output formats need to be present in the analysis folder for that?