wyguo / ThreeDRNAseq

A pipeline for differential expression and differential alternative splicing analysis
https://github.com/wyguo/ThreeDRNAseq
GNU General Public License v3.0
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[Bug] Step label misleading for batch effect removal #7

Open peterjc opened 5 years ago

peterjc commented 5 years ago

Thanks for using our 3D RNA-seq App. Describe the bug

"Step 2: Principal component analysis (PCA)"

"Step 3: Estimate batch effects"

Should rename this to something like:

"Step 3: Remove any batch effects"

The idea is you look at the PCA plots from step 2, and decide if you need to remove a batch effect or not in step 3.

Screenshots

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Additional context Add any other context about the problem here.