Dr Wang:
In the early vserions of MSCanX, the parameter “u” designated the intergenetic distance (defualt value:10kb). This may be true for angiosperms, but recently, we sequenced a fern genome, and found the average genetic distance about 100kb, We have used the updated version of MCSCanX, the propotions of synteny blocks was extremly small, we wonder know what the default parameter for the prevous 'U'. W're appreciated if you provides us the old versions with paramter setting for U
Thanks for your help.
Wei
Dr Wang: In the early vserions of MSCanX, the parameter “u” designated the intergenetic distance (defualt value:10kb). This may be true for angiosperms, but recently, we sequenced a fern genome, and found the average genetic distance about 100kb, We have used the updated version of MCSCanX, the propotions of synteny blocks was extremly small, we wonder know what the default parameter for the prevous 'U'. W're appreciated if you provides us the old versions with paramter setting for U Thanks for your help. Wei